View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12522_low_20 (Length: 233)
Name: NF12522_low_20
Description: NF12522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12522_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 6 - 217
Target Start/End: Original strand, 580527 - 580738
Alignment:
| Q |
6 |
gaggagaagcaaaggaacttgatggagaaacacggagatagagttgatcacgatgttttggctgagatggatgtcttgtataggtgcattaaagaagccc |
105 |
Q |
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| T |
580527 |
gaggaggagcaaaagaacttgatggagaaacacggagatagagttgatcacgatgttttggctgagatggatgtcttgtataggtgcattaaagaagccc |
580626 |
T |
|
| Q |
106 |
tgagactccaccctccactaattatgttgctgagaagctcacacagcgatttcagcgtcacaacaagagaggggaaagagtatgacattcccaagggtca |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
580627 |
tgagactccaccctccactaattatgttgctgagaagctcacacagcgatttcagcgtcacaacaagagaggggaaagagtatgacattcccaagggtca |
580726 |
T |
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| Q |
206 |
tatagttgctac |
217 |
Q |
| |
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|||||||||||| |
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| T |
580727 |
tatagttgctac |
580738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 6 - 217
Target Start/End: Complemental strand, 591900 - 591689
Alignment:
| Q |
6 |
gaggagaagcaaaggaacttgatggagaaacacggagatagagttgatcacgatgttttggctgagatggatgtcttgtataggtgcattaaagaagccc |
105 |
Q |
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|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
591900 |
gaggaggagcaaaagaacttgatggagaaacacggagatagagttgatcacgatgttttggctgagatggatgtcttgtataggtgcattaaagaagccc |
591801 |
T |
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| Q |
106 |
tgagactccaccctccactaattatgttgctgagaagctcacacagcgatttcagcgtcacaacaagagaggggaaagagtatgacattcccaagggtca |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
591800 |
tgagactccaccctccactaattatgttgctgagaagctcacacagcgatttcagcgtcacaacaagagaggggaaagagtatgacattcccaagggtca |
591701 |
T |
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| Q |
206 |
tatagttgctac |
217 |
Q |
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|||||||||||| |
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| T |
591700 |
tatagttgctac |
591689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 105 - 210
Target Start/End: Original strand, 37434363 - 37434468
Alignment:
| Q |
105 |
ctgagactccaccctccactaattatgttgctgagaagctcacacagcgatttcagcgtcacaacaagagaggggaaagagtatgacattcccaagggtc |
204 |
Q |
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|||||||||||||||||| | |||||| |||||||| ||||||| | ||||||||||||||||||||||| |||||| |||||| ||||||||||||| |
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| T |
37434363 |
ctgagactccaccctccattgattatgccgctgagaaactcacacggagatttcagcgtcacaacaagagaagggaaaaagtatggaattcccaagggtc |
37434462 |
T |
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| Q |
205 |
atatag |
210 |
Q |
| |
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|||||| |
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| T |
37434463 |
atatag |
37434468 |
T |
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