View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12522_low_3 (Length: 429)
Name: NF12522_low_3
Description: NF12522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12522_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 417
Target Start/End: Original strand, 3881420 - 3881826
Alignment:
| Q |
18 |
agatggactctgctccttgtattggctcccaaatttaaccctgcttgatttatcatacactttcttggtgactctgcagcctgtttttgactcttgtaaa |
117 |
Q |
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| T |
3881420 |
agatggaccctgctccttgtattggctcccaaatttaaccctgcttgatttatcatacactttcttggtgactctgcagcctgtttttgactcttgtaaa |
3881519 |
T |
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| Q |
118 |
caacttaaggtaaaag-catcatcttttagttcacatgttttt-actgtctagcatattacagattgtataatagtagcggagaacc--tcctcccatcc |
213 |
Q |
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| T |
3881520 |
caactaaaggtaaaaaacattatattttagtttacatattttttactgtcttgcaaattacaaatagtataatagtagtgaagaaccgctcctcccatcc |
3881619 |
T |
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| Q |
214 |
tcaaaacaaatctccagaagtggtggttatttagtttgataaacctagcgaagttgtgatgttatactaccatacacacagaagttgttcagaagagctt |
313 |
Q |
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| T |
3881620 |
tcaaaacaaatctccagaagtggtggttatttagtttgataaacctagcgaagttgtgatgttatactaccatacacacagaagttgttcagaagagctt |
3881719 |
T |
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| Q |
314 |
atttgtgtctatctcgtgtttaaataattatattattaatgtttttggattt--nnnnnnnnncatttatttcatttttcatcgtttcctg-ttctgcaa |
410 |
Q |
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| T |
3881720 |
atttgtgtctatctcgtgtttaaatacttatattattaatgtttttggatttaaaaaaaaaaacatttatttcatttttcatcgtttcctgcttctgcaa |
3881819 |
T |
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| Q |
411 |
cagtgaa |
417 |
Q |
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| T |
3881820 |
caatgaa |
3881826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 3867661 - 3867896
Alignment:
| Q |
18 |
agatggactctgctccttgtattggctcccaaatttaaccctgcttgatttatcatacactttcttggtgactctgcagcctgtttttgactcttgtaaa |
117 |
Q |
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|||||||||||| ||| || ||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
3867661 |
agatggactctgttccctgcattggctcccaaatttagctctgcttgatttatcatacactttcctggtgactctgcagcctgtttttgattcttgtaaa |
3867760 |
T |
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| Q |
118 |
caacttaaggt-aaaagcatcatcttttagttcacat-gtttttactgtctagcatattacagattgtataatagtagcggagaac--ctcctcccatcc |
213 |
Q |
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| T |
3867761 |
caactaaaggtaaaaaacattatattttagtttacatattttttactgtcttgcaaattacaaatagtataatagtagtgaagaaccgctcctcccatcc |
3867860 |
T |
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| Q |
214 |
tcaaaacaaatctccagaagtggtggttatttagtt |
249 |
Q |
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| T |
3867861 |
tcaaaacaaatctacggaagtgagggttatttagtt |
3867896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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