View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12523_high_1 (Length: 564)
Name: NF12523_high_1
Description: NF12523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12523_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 75 - 529
Target Start/End: Complemental strand, 19770126 - 19769658
Alignment:
| Q |
75 |
tcacttcggtcgaacaatacctaaacaaacaatcaaactacgaaatcaacatttatatgagatgattttccaatgtcaaaaccaaacagttt-------- |
166 |
Q |
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||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
19770126 |
tcacttcggtcgaacaacacctaaacgaacaatcaaactacgaaatcaacatttatatgagataattttccaatgtcaaaaccaaacagaattaacaatt |
19770027 |
T |
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| Q |
167 |
------agttcaacttcatagtgaataatctgatatgataagagaagcagatataagcatcacctcaacgtttgaaattgaatcgccaccgtaatgctat |
260 |
Q |
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| T |
19770026 |
gaactaagctcaatttcatagtgaataatctgatatgataagagaagcagatataagcatcacctcaacgtttgaaattgaatcgccaccgtaatgctat |
19769927 |
T |
|
| Q |
261 |
ctcgaggcatggaagaatccagttgctccgcgattacctcctccattggagaagaacaaaccatagaacaacattacatccacctctacctttctctagc |
360 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19769926 |
ctcgaggcatggaagaatccagatgctccgcgattacctcctccattggagaagaacaaaccatagaacaacattacatccacctctacctttctctagc |
19769827 |
T |
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| Q |
361 |
tgcctccacacctgtttaaaaaattcagtgccttggttttccatatacaccagaaaaataggagcaacaaaaaatatgaattatcaatcatcataaatgc |
460 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
19769826 |
tgcctccacacctgtttaaaaaattcagtgccttggttttccatatacaccagaaaaataggagcaacaaaaaacatgaattatcaatcatcataaatgc |
19769727 |
T |
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| Q |
461 |
ttcaatagaataattgagatcatatgaacatatttaagcaatagttaatataagcccttttcaatatat |
529 |
Q |
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| T |
19769726 |
ttcaatagaataattgagatcatatgaacatatttaagcaatagttaatataagcccttttcaatatat |
19769658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 19770200 - 19770167
Alignment:
| Q |
15 |
ggggtgaaaagcatgacaggttaggttagaaaat |
48 |
Q |
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| T |
19770200 |
ggggtgaaaagcatgacaggttaggttagtaaat |
19770167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 136; Significance: 1e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 176 - 363
Target Start/End: Complemental strand, 32524306 - 32524119
Alignment:
| Q |
176 |
tcatagtgaataatctgatatgataagagaagcagatataagcatcacctcaacgtttgaaattgaatcgccaccgtaatgctatctcgaggcatggaag |
275 |
Q |
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||||| |||||||| |||||| ||||||||| |||| |||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||| |
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| T |
32524306 |
tcataatgaataatatgatatcataagagaattagatctaagcatcacctcaacgtttaaaattgaatcgtcgccgtaatgctatctcgaggcatggaag |
32524207 |
T |
|
| Q |
276 |
aatccagttgctccgcgattacctcctccattggagaagaacaaaccatagaacaacattacatccacctctacctttctctagctgc |
363 |
Q |
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| T |
32524206 |
aatccaaatgctccgcgattacctcctccattggagaagaacaaaccatagaacaacattacatctacctctacctttctctatctgc |
32524119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 317 - 423
Target Start/End: Original strand, 44711054 - 44711162
Alignment:
| Q |
317 |
caaaccatagaacaacattacatccacctct----acctttctctagctgcctccacacctgtttaaaaaattcagtgccttggttttccatatacacca |
412 |
Q |
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|||||||||||| || ||||||||||||||| |||||||||||||||||| ||| |||||||||||| ||||| ||||| |||||||||||||||| |
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| T |
44711054 |
caaaccatagaataaaattacatccacctctgcgtacctttctctagctgccttcac--ctgtttaaaaaactcagttccttgattttccatatacacca |
44711151 |
T |
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| Q |
413 |
gaaaaatagga |
423 |
Q |
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||||||||||| |
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| T |
44711152 |
gaaaaatagga |
44711162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 385 - 529
Target Start/End: Complemental strand, 44162452 - 44162309
Alignment:
| Q |
385 |
tcagtgccttggttttccatatacaccagaaaaataggagca--acaaaaaatatgaattatcaatcatcataaa--tgcttcaatagaataattgagat |
480 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||| | |||||| | ||||| |||||||||||| | ||||||||||||||| ||||||| |
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| T |
44162452 |
tcagtgccttggttttccatatacaccataaaa-taggagcacaaaaaaaaacacgaattgtcaatcatcatatacatgcttcaatagaatacttgagat |
44162354 |
T |
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| Q |
481 |
catatgaacatatttaagcaatagttaatataagcccttttcaatatat |
529 |
Q |
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| T |
44162353 |
catatgtacatatttcagcaa----taatataagtccctttcaatatat |
44162309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 150
Target Start/End: Original strand, 18931381 - 18931434
Alignment:
| Q |
97 |
aaacaaacaatcaaactacgaaatcaacatttatatgagatgattttccaatgt |
150 |
Q |
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||||||| ||||||||||| ||||||| ||| |||| |||| |||||||||||| |
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| T |
18931381 |
aaacaaagaatcaaactacaaaatcaaaattgatatcagataattttccaatgt |
18931434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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