View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12523_high_11 (Length: 228)
Name: NF12523_high_11
Description: NF12523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12523_high_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 20 - 199
Target Start/End: Original strand, 21179298 - 21179477
Alignment:
| Q |
20 |
cctatgccctaataatccaccattatcactaaaaacagtaaccctaccctacatattgttatcatcatcgtatattcatattcaaaaccatggcaagaga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21179298 |
cctatgccctaataatccaccattatcactaaaaacagtaaccctaccctacatattgttatcatcatcgtatattcatattcaaaaccatggcaagaga |
21179397 |
T |
|
| Q |
120 |
taacatggaattgttttcttcgatactaaaaccacttcttcttgcaatcgtttctttcctaccctcccaagaagccacaa |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21179398 |
taacatggaattgttttcttcgatactaaaaccacttcttcttgcaatcgtttctttcctaccctcccaagaagccacaa |
21179477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 40995496 - 40995331
Alignment:
| Q |
19 |
acctatgccctaataatccaccattatcactaaaaacagtaaccctaccctacatattgttatcatcatcgtatattcatattcaaaaccatggcaagag |
118 |
Q |
| |
|
|||||||||| |||||| ||||| |||||||||| ||||||||||||| |||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
40995496 |
acctatgcccaaataattcaccactatcactaaacacagtaaccctaca-----------tatcattatcgtatattcataatcaaaaccatggcaagaa |
40995408 |
T |
|
| Q |
119 |
ataacatggaattgttttcttcgatactaaaaccacttcttcttgcaatcgtttctttcctaccctcccaagaagcc |
195 |
Q |
| |
|
||||||||||||||||||||| |||| | || | |||| |||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
40995407 |
ataacatggaattgttttctttgatatcagaatcgcttcgtcttgcaatcgtttctttcctaccttccgaagaagcc |
40995331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University