View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12523_high_13 (Length: 217)
Name: NF12523_high_13
Description: NF12523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12523_high_13 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 9e-94; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 15519253 - 15519458
Alignment:
| Q |
12 |
tggttgttggaaagtggtattgtccatttatgtttgtgaaggaaagagtgaatttaaaggagcaaatgaagatgtcagtgttctatgagctaacacttga |
111 |
Q |
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| T |
15519253 |
tggttgttggaaagtggtattgtccttttatgtttgttaaggaaggaatgaatttaaaagagcaaatgaagatgtcaatgttctatgagctaacacttga |
15519352 |
T |
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| Q |
112 |
gcaaagatgggagaagatattttcaaaggaaaatagtggagaaggtgatgtggttgtagatgttgctattcaaacagaagttgcaaaggttgaaggaaag |
211 |
Q |
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| T |
15519353 |
gcaaagatgggagaagatattttcaaaggaaaatagtggagaaggtggtgtggttgtagatgttgctattcaaacagaagttgctaaggttgaaggaaag |
15519452 |
T |
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| Q |
212 |
gatgct |
217 |
Q |
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|||||| |
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| T |
15519453 |
gatgct |
15519458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 15528992 - 15529197
Alignment:
| Q |
12 |
tggttgttggaaagtggtattgtccatttatgtttgtgaaggaaagagtgaatttaaaggagcaaatgaagatgtcagtgttctatgagctaacacttga |
111 |
Q |
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| T |
15528992 |
tggttgttggaaagtggtattgtccatttatgtttgtgaaggaaggaaagaatttaaaggagcagatgaagacgtcaatgttttatgagctaacacttga |
15529091 |
T |
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| Q |
112 |
gcaaagatgggagaagatattttcaaaggaaaatagtggagaaggtgatgtggttgtagatgttgctattcaaacagaagttgcaaaggttgaaggaaag |
211 |
Q |
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| T |
15529092 |
gcaaagatgggagaagatattttcaaaggaaaatagtggagaaggtggtgtgcttgtagatgttgctattcaaacagaagttgctaaggttgaaagaaag |
15529191 |
T |
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| Q |
212 |
gatgct |
217 |
Q |
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|||||| |
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| T |
15529192 |
gatgct |
15529197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 15546500 - 15546705
Alignment:
| Q |
12 |
tggttgttggaaagtggtattgtccatttatgtttgtgaaggaaagagtgaatttaaaggagcaaatgaagatgtcagtgttctatgagctaacacttga |
111 |
Q |
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| T |
15546500 |
tggttgttggaaagtggtattgtccatttatgtttgtgaaggaaggaatgaatttaaaggagcatatgaagatgtcaacattctatgagctaacacttga |
15546599 |
T |
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| Q |
112 |
gcaaagatgggagaagatattttcaaaggaaaatagtggagaaggtgatgtggttgtagatgttgctattcaaacagaagttgcaaaggttgaaggaaag |
211 |
Q |
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| T |
15546600 |
gcaaagatgggagaagattttttcaaaggaaaatagtggagaaggtgatgtgcttgtagatgttgttattcaaacagaaattgctaaggttgaaggaaag |
15546699 |
T |
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| Q |
212 |
gatgct |
217 |
Q |
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|||||| |
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| T |
15546700 |
gatgct |
15546705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 15 - 217
Target Start/End: Original strand, 15522908 - 15523116
Alignment:
| Q |
15 |
ttgttggaaagtggtattgtccatttatgtttgtgaaggaaagagtgaatttaaaggagcaaatgaagatgtcagtgttctatgagctaacacttgagca |
114 |
Q |
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| T |
15522908 |
ttgttggaaactggtattgtccttttatgtttgtgaaagaaggaatgaatttaaaggagcagatgaagatgtcaatgttctatgagctaacacttgagca |
15523007 |
T |
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| Q |
115 |
aagatgggagaagatattttcaaag------gaaaatagtggagaaggtgatgtggttgtagatgttgctattcaaacagaagttgcaaaggttgaagga |
208 |
Q |
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| T |
15523008 |
aagatgggagaagatattttcaaaggaaaatgaaaatagtggagaaggtgatgtggttgtagatgttgttattcaaacagaagttgctaaaattgaagga |
15523107 |
T |
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| Q |
209 |
aaggatgct |
217 |
Q |
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| T |
15523108 |
aaggatgct |
15523116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 21 - 169
Target Start/End: Original strand, 15549266 - 15549404
Alignment:
| Q |
21 |
gaaagtggtattgtccatttatgtttgtgaaggaaagagtgaatttaaaggagcaaatgaagatgtcagtgttctatgagctaacacttgagcaaagatg |
120 |
Q |
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| T |
15549266 |
gaaagtggtattgtccatttatgtttgtgatggaaagagtgaatttaaaggagcaaatgaagatgtcagtgttctatga----------gagcaaagatg |
15549355 |
T |
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| Q |
121 |
ggagaagatattttcaaaggaaaatagtggagaaggtgatgtggttgta |
169 |
Q |
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| T |
15549356 |
ggagaagaatttttcaaaggaaaatagtggagaaggtgatgtgcttgta |
15549404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 15551297 - 15551508
Alignment:
| Q |
12 |
tggttgttggaaagtggtattgtccatttatgtttgtgaaggaaagagtgaatttaaaggagcaaatgaagatgtcagtgttctatgagctaacacttga |
111 |
Q |
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||||||||||||| ||||||||||| ||||||||||| |||||| || ||| |||||||| |||||| | || ||| ||||||||||| | || || || |
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| T |
15551297 |
tggttgttggaaaatggtattgtccttttatgtttgtaaaggaaggaatgacattaaaggaacaaatggaaatatcattgttctatgagttgacgctcga |
15551396 |
T |
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| Q |
112 |
gcaaagatgggagaagatattttcaaaggaaaat------agtggagaaggtgatgtggttgtagatgttgctattcaaacagaagttgcaaaggttgaa |
205 |
Q |
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| T |
15551397 |
gcaaagatgggagaagatagtttcaaaagaaaatgaaaacggtgaaaagaatgatgtgttagtagatgttgctattcaaacagaagttgctaaggttgaa |
15551496 |
T |
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| Q |
206 |
ggaaaggatgct |
217 |
Q |
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| T |
15551497 |
agaaaggatgct |
15551508 |
T |
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