View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12523_high_14 (Length: 216)

Name: NF12523_high_14
Description: NF12523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12523_high_14
NF12523_high_14
[»] chr7 (5 HSPs)
chr7 (92-216)||(46524810-46524934)
chr7 (26-93)||(11016953-11017020)
chr7 (26-93)||(4290629-4290696)
chr7 (94-178)||(46532395-46532473)
chr7 (29-91)||(41945844-41945906)
[»] scaffold0016 (1 HSPs)
scaffold0016 (26-92)||(49691-49757)
[»] chr8 (4 HSPs)
chr8 (26-92)||(5033245-5033311)
chr8 (26-91)||(33841580-33841645)
chr8 (26-91)||(35440958-35441023)
chr8 (29-90)||(1880229-1880289)
[»] chr5 (6 HSPs)
chr5 (26-91)||(16971228-16971293)
chr5 (26-90)||(13312254-13312318)
chr5 (26-90)||(2953274-2953338)
chr5 (26-89)||(3899923-3899986)
chr5 (26-90)||(291181-291245)
chr5 (26-90)||(12913793-12913857)
[»] chr4 (7 HSPs)
chr4 (26-98)||(42375094-42375166)
chr4 (26-90)||(51265529-51265593)
chr4 (26-90)||(47661926-47661990)
chr4 (28-90)||(30709986-30710048)
chr4 (23-84)||(5048881-5048942)
chr4 (29-90)||(35682156-35682217)
chr4 (54-90)||(55516963-55516999)
[»] chr1 (5 HSPs)
chr1 (26-90)||(48993907-48993971)
chr1 (26-89)||(32540832-32540895)
chr1 (26-92)||(29179585-29179651)
chr1 (54-91)||(44183438-44183475)
chr1 (26-94)||(5995453-5995521)
[»] chr2 (4 HSPs)
chr2 (26-92)||(38933671-38933737)
chr2 (26-90)||(16514508-16514572)
chr2 (26-94)||(32545872-32545940)
chr2 (29-93)||(35204154-35204218)
[»] chr3 (3 HSPs)
chr3 (29-90)||(30734489-30734550)
chr3 (26-84)||(30580752-30580810)
chr3 (26-90)||(45103099-45103163)


Alignment Details
Target: chr7 (Bit Score: 101; Significance: 3e-50; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 92 - 216
Target Start/End: Complemental strand, 46524934 - 46524810
Alignment:
92 tatttatgtcggctcatttgtccattataaagtatcatcaagtatcaacagcatcaaaatattgaaatttcttcacagttgctctgagcccnnnnnnnng 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |    
46524934 tatttatgtcggctcatttgtccattataaagtatcatcaagtatcaacagcatcaaaatattgaaatttcttcacagttgctctgagcccaaaaaaaag 46524835  T
192 aacacagatggaaggaatagaacac 216  Q
    |||||||||||||||||||||||||    
46524834 aacacagatggaaggaatagaacac 46524810  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 11016953 - 11017020
Alignment:
26 ttgtgacattatgattggttaatgttatcaatgtcacctaattatatgtcacccaagtgctacccgta 93  Q
    |||||||||| |||||||| ||||| | |||||||||| || | ||||||||||||||||||||||||    
11016953 ttgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtgctacccgta 11017020  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 4290629 - 4290696
Alignment:
26 ttgtgacattatgattggttaatgttatcaatgtcacctaattatatgtcacccaagtgctacccgta 93  Q
    |||||||||| |||||||  ||||| | |||||||||| || | ||||||||||||||||||||||||    
4290629 ttgtgacattgtgattggccaatgtcaccaatgtcacccaactgtatgtcacccaagtgctacccgta 4290696  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 178
Target Start/End: Complemental strand, 46532473 - 46532395
Alignment:
94 tttatgtcggctcatttgtccattataaagtatcatcaagtatcaacagcatcaaaatattg-aaatttcttcacagttgctctga 178  Q
    |||||||||| |||||||||| |||||||||||||       ||||| |||||||||||||| ||||||||||| |||||||||||    
46532473 tttatgtcggttcatttgtccgttataaagtatca-------tcaaccgcatcaaaatattgaaaatttcttcatagttgctctga 46532395  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 41945906 - 41945844
Alignment:
29 tgacattatgattggttaatgttatcaatgtcacctaattatatgtcacccaagtgctacccg 91  Q
    ||||||||||||||  |||||| |||||||||||  |||| ||||||| | ||||||||||||    
41945906 tgacattatgattgactaatgtcatcaatgtcactcaattctatgtcatctaagtgctacccg 41945844  T

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Target: scaffold0016 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 49757 - 49691
Alignment:
26 ttgtgacattatgattggttaatgttatcaatgtcacctaattatatgtcacccaagtgctacccgt 92  Q
    |||||||||| |||||||| ||||| |||||||||||| || | |||||||||||||||||||||||    
49757 ttgtgacattgtgattggtcaatgtcatcaatgtcacccaactctatgtcacccaagtgctacccgt 49691  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 5033245 - 5033311
Alignment:
26 ttgtgacattatgattggttaatgttatcaatgtcacctaattatatgtcacccaagtgctacccgt 92  Q
    |||||||||| |||||||| ||||| | |||||||||| || | |||||||||||||||||||||||    
5033245 ttgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtgctacccgt 5033311  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 33841645 - 33841580
Alignment:
26 ttgtgacattatgattggttaatgttatcaatgtcacctaattatatgtcacccaagtgctacccg 91  Q
    |||||||| | |||||||| ||||| | |||||||||| || | ||||||||||||||||||||||    
33841645 ttgtgacaatgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtgctacccg 33841580  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 35441023 - 35440958
Alignment:
26 ttgtgacattatgattggttaatgttatcaatgtcacctaattatatgtcacccaagtgctacccg 91  Q
    |||||||||| |||||||| ||||| | |||||||||| || | || |||||||||||||||||||    
35441023 ttgtgacattgtgattggtcaatgtcaccaatgtcacccaactctaagtcacccaagtgctacccg 35440958  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 1880289 - 1880229
Alignment:
29 tgacattatgattggttaatgttatcaatgtcacctaattatatgtcacccaagtgctaccc 90  Q
    ||||||| |||||||| ||||| | || ||||||| |||| |||||||||||||||||||||    
1880289 tgacattgtgattggtcaatgtcaccagtgtcacc-aattctatgtcacccaagtgctaccc 1880229  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 16971228 - 16971293
Alignment:
26 ttgtgacattatgattggttaatgttatcaatgtcacctaattatatgtcacccaagtgctacccg 91  Q
    |||||||||| |||||||| ||||| | |||||||||| || | ||||||||||||||||||||||    
16971228 ttgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtgctacccg 16971293  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 13312318 - 13312254
Alignment:
26 ttgtgacattatgattggttaatgttatcaatgtcacctaattatatgtcacccaagtgctaccc 90  Q
    |||||||||| |||||| | ||||| ||||||||||||||| | ||||||||| |||||||||||    
13312318 ttgtgacattgtgattgatcaatgtcatcaatgtcacctaactctatgtcacctaagtgctaccc 13312254  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 2953274 - 2953338
Alignment:
26 ttgtgacattatgattggttaatgttatcaatgtcacctaattatatgtcacccaagtgctaccc 90  Q
    |||||||||| |||||||  ||||| | |||||||||| || | |||||||||||||||||||||    
2953274 ttgtgacattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtgctaccc 2953338  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 3899923 - 3899986
Alignment:
26 ttgtgacattatgattggttaatgttatcaatgtcacctaattatatgtcacccaagtgctacc 89  Q
    |||||||||| |||||||| ||||| | |||||||||| || | || |||||||||||||||||    
3899923 ttgtgacattgtgattggtcaatgtcaccaatgtcacccaactctaagtcacccaagtgctacc 3899986  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 291181 - 291245
Alignment:
26 ttgtgacattatgattggttaatgttatcaatgtcacctaattatatgtcacccaagtgctaccc 90  Q
    |||||||||| |||||| | ||||| | |||||||||| || | ||| |||||||||||||||||    
291181 ttgtgacattgtgattgatcaatgtcaccaatgtcacccaactctatatcacccaagtgctaccc 291245  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 12913857 - 12913793
Alignment:
26 ttgtgacattatgattggttaatgttatcaatgtcacctaattatatgtcacccaagtgctaccc 90  Q
    |||||||||| |||||||  ||||| | |||||||||  || |||||||||| ||||||||||||    
12913857 ttgtgacattgtgattggccaatgtcaccaatgtcactcaactatatgtcacacaagtgctaccc 12913793  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 42375094 - 42375166
Alignment:
26 ttgtgacattatgattggttaatgttatcaatgtcacctaattatatgtcacccaagtgctacccgtatttat 98  Q
    |||||||||| |||||| | ||||| | |||||||||| || | ||||||||||||||||||||| |||||||    
42375094 ttgtgacattgtgattgatcaatgtcaccaatgtcacccaactctatgtcacccaagtgctacccttatttat 42375166  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 51265529 - 51265593
Alignment:
26 ttgtgacattatgattggttaatgttatcaatgtcacctaattatatgtcacccaagtgctaccc 90  Q
    ||||||||||||||||||| ||||| | |||||||||| || | || ||||||||||||||||||    
51265529 ttgtgacattatgattggtcaatgtcaccaatgtcacccaactctaagtcacccaagtgctaccc 51265593  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 47661926 - 47661990
Alignment:
26 ttgtgacattatgattggttaatgttatcaatgtcacctaattatatgtcacccaagtgctaccc 90  Q
    |||||||||| |||||||| ||||| | |||||||||| || | |||||||||||| ||||||||    
47661926 ttgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaaatgctaccc 47661990  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 30709986 - 30710048
Alignment:
28 gtgacattatgattggttaatgttatcaatgtcacctaattatatgtcacccaagtgctaccc 90  Q
    |||||||| |||||||  ||||| | ||||||||||||| | |||||||||||||||| ||||    
30709986 gtgacattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtgccaccc 30710048  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 5048881 - 5048942
Alignment:
23 ttgttgtgacattatgattggttaatgttatcaatgtcacctaattatatgtcacccaagtg 84  Q
    ||||||||||||||||||||   ||||| |||||||||||| || | ||||||| |||||||    
5048881 ttgttgtgacattatgattgaccaatgtcatcaatgtcacccaactctatgtcatccaagtg 5048942  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 35682217 - 35682156
Alignment:
29 tgacattatgattggttaatgttatcaatgtcacctaattatatgtcacccaagtgctaccc 90  Q
    ||||||| |||||||  ||||| | |||| |||||||| | |||||||||||||||||||||    
35682217 tgacattgtgattggccaatgtcaccaatatcacctaactctatgtcacccaagtgctaccc 35682156  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 55516963 - 55516999
Alignment:
54 caatgtcacctaattatatgtcacccaagtgctaccc 90  Q
    |||||||||| ||||||||||||||||| ||||||||    
55516963 caatgtcaccaaattatatgtcacccaattgctaccc 55516999  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 48993971 - 48993907
Alignment:
26 ttgtgacattatgattggttaatgttatcaatgtcacctaattatatgtcacccaagtgctaccc 90  Q
    |||||||||| |||||||| ||||| | |||||||||| || | |||||||||||||||||||||    
48993971 ttgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtgctaccc 48993907  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 32540832 - 32540895
Alignment:
26 ttgtgacattatgattggttaatgttatcaatgtcacctaattatatgtcacccaagtgctacc 89  Q
    |||| ||||| |||||||| ||||| | |||||||| | |||| ||||||||||||||||||||    
32540832 ttgtaacattgtgattggtcaatgtcaccaatgtcatccaattctatgtcacccaagtgctacc 32540895  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 29179651 - 29179585
Alignment:
26 ttgtgacattatgattggttaatgttatcaatgtcacctaattatatgtcacccaagtgctacccgt 92  Q
    |||||||||| |||||||| | ||| | |||||||||| || | ||||||| |||||||||||||||    
29179651 ttgtgacattgtgattggtcagtgtcaccaatgtcacccaactctatgtcatccaagtgctacccgt 29179585  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 91
Target Start/End: Original strand, 44183438 - 44183475
Alignment:
54 caatgtcacctaattatatgtcacccaagtgctacccg 91  Q
    ||||||||||||| | ||||||||||||||||||||||    
44183438 caatgtcacctaactctatgtcacccaagtgctacccg 44183475  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 5995453 - 5995521
Alignment:
26 ttgtgacattatgattggttaatgttatcaatgtcacctaattatatgtcacccaagtgctacccgtat 94  Q
    ||||| |||| |||||||| ||||| | |||||||| | || | ||||||||||||||| |||||||||    
5995453 ttgtggcattgtgattggtcaatgtcaccaatgtcatccaactctatgtcacccaagtgttacccgtat 5995521  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 38933671 - 38933737
Alignment:
26 ttgtgacattatgattggttaatgttatcaatgtcacctaattatatgtcacccaagtgctacccgt 92  Q
    ||||||||||||||||||  || || | |||||||||| || | |||||||||||||||||||||||    
38933671 ttgtgacattatgattggccaacgtcaccaatgtcacccaactctatgtcacccaagtgctacccgt 38933737  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 16514508 - 16514572
Alignment:
26 ttgtgacattatgattggttaatgttatcaatgtcacctaattatatgtcacccaagtgctaccc 90  Q
    |||||||||| |||||||| ||||| | |||| ||||| || | |||||||||||||||||||||    
16514508 ttgtgacattgtgattggtcaatgtcaccaatctcacccaactctatgtcacccaagtgctaccc 16514572  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 32545872 - 32545940
Alignment:
26 ttgtgacattatgattggttaatgttatcaatgtcacctaattatatgtcacccaagtgctacccgtat 94  Q
    ||||||||||||||||||  ||||| | |||||||||  || | |||||||||||||||||| ||||||    
32545872 ttgtgacattatgattggccaatgtcaccaatgtcactaaactctatgtcacccaagtgctatccgtat 32545940  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 35204154 - 35204218
Alignment:
29 tgacattatgattggttaatgttatcaatgtcacctaattatatgtcacccaagtgctacccgta 93  Q
    ||||||||| ||||   ||||| ||||||||| |  |||| ||||||||||||||||||||||||    
35204154 tgacattataattgaccaatgtcatcaatgtctcaaaattctatgtcacccaagtgctacccgta 35204218  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 30734489 - 30734550
Alignment:
29 tgacattatgattggttaatgttatcaatgtcacctaattatatgtcacccaagtgctaccc 90  Q
    ||||||| |||||||  ||||| | ||||||||||||| | |||||||||||||||||||||    
30734489 tgacattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtgctaccc 30734550  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 30580810 - 30580752
Alignment:
26 ttgtgacattatgattggttaatgttatcaatgtcacctaattatatgtcacccaagtg 84  Q
    ||||||||||||||||||| ||| | | |||||||||| |||| |||||||| ||||||    
30580810 ttgtgacattatgattggtcaatatcaccaatgtcacccaattctatgtcactcaagtg 30580752  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 45103163 - 45103099
Alignment:
26 ttgtgacattatgattggttaatgttatcaatgtcacctaattatatgtcacccaagtgctaccc 90  Q
    |||||||||| |||||| | ||| | | |||||||||| || | |||||||||||||||||||||    
45103163 ttgtgacattgtgattgatcaatatcaccaatgtcacccaactctatgtcacccaagtgctaccc 45103099  T

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