View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12523_high_2 (Length: 549)
Name: NF12523_high_2
Description: NF12523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12523_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 11 - 529
Target Start/End: Original strand, 46618211 - 46618732
Alignment:
| Q |
11 |
caaaggaagaagataaattaaattggtgcataaattannnnnnngagagaaaattggtacataattagtaatgtcaaagattagggttaatatccaaagt |
110 |
Q |
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| T |
46618211 |
caaaggaagaagataaattaaattggtgcataaattatttttttgagagaaaatt-----------agtaatgtcaaagattagggttaatatccaaagt |
46618299 |
T |
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| Q |
111 |
gggggacctttcacgcgacttaatgaaaaaagttgaagcagcgtcggtatcaagctgttactatgaaagtttgacaagtatacattgcaaataaagttcc |
210 |
Q |
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| T |
46618300 |
gggg-acctttcacgcgacttaatgaaaaaagttgaagcagcgtcggtatcaagctgttactatgaaagtttgacaagtatacattgcaaataaagttcc |
46618398 |
T |
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| Q |
211 |
ttttatgtatggtgcatacgtaggggaatgatttaggctttcctaatttttc-----------tgcttctgtttgattgcaccattcatgaaccagattt |
299 |
Q |
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| T |
46618399 |
ttttatgtatggtgcatacgtaggggaatgatttaggctttcctaatttttctgcttctcatgtgcttctgtttgattgcaccattcatgaaccagattt |
46618498 |
T |
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| Q |
300 |
tctaatattacaaaaaagcaaattcctcc------nnnnnnnnnnggtgaatcagttacagttaagatgttaaaaaattaggttggatttaatatggaag |
393 |
Q |
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| T |
46618499 |
tctaata-tacaaaaaagcaaattcctccaaaaaaaaaaaaaaaaggtgaatcagttacagttaagatgttaaaaaattaggttggatttaatatggaag |
46618597 |
T |
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| Q |
394 |
gcacaaatagcaaaggaataggaaaaacaattgcagcgtgattaataatcacatcatgaacacaatgctgtgataaaaaagtggaaagtttatgtggtga |
493 |
Q |
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| T |
46618598 |
gcacaaatagcaaaggaataggaaaaacaattgcagcgtgattaataatcacatcatgaacacaatgctgtgataaaaaagtggaaag-ttatgtggtga |
46618696 |
T |
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| Q |
494 |
gatttctaaaatgattacattaaagagaagactata |
529 |
Q |
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| T |
46618697 |
gatttctaaaatgattacattaaagagaagactata |
46618732 |
T |
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