View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12523_high_3 (Length: 517)
Name: NF12523_high_3
Description: NF12523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12523_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-144; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 37 - 404
Target Start/End: Original strand, 43658277 - 43658651
Alignment:
| Q |
37 |
ggggatttcaatgcggcgcgcagggtgaaagaaagaaggtcgactcggcgtg------acacaa-gaattttgtgccttataataattttattcaagaaa |
129 |
Q |
| |
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|||||||||||||||| |||||||||| ||||||||||||| |||||||||| || ||| |||||||| ||||| ||||||||||||| |||||| |
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| T |
43658277 |
ggggatttcaatgcggtgcgcagggtggaagaaagaaggtcaactcggcgtgggggtgacgcaacgaattttgcgccttttaataattttattgaagaaa |
43658376 |
T |
|
| Q |
130 |
atatgctaattcatttaccgttgtgcagtctgaggtccacatggtttaagggcgatggcgtatctatgaataggattgacagatttttgctattggagga |
229 |
Q |
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||||||||||| |||||||||| ||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43658377 |
atatgctaattgatttaccgttatgcggtctgaggttcacgtggtttaagggcgatggcgtatctatgaataggattgacagatttttgctatcggagga |
43658476 |
T |
|
| Q |
230 |
gtggtgcttaagatggcctaatagtcttcagattggtcttcttcgtggggtttccgatcattacccgcttcagttgtcggtggatgaggaaaattggggt |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
43658477 |
gtggtgcttaagatggcctaatagtcttcagattggtcttctttgtggggtttccgatcattgcccgcttcagttgtcagtggatgaggaaaattggggt |
43658576 |
T |
|
| Q |
330 |
cctcgtcctactcgtgtgtggaaatgctggcaagacatgcctggttataagcagtttgtagtcgaagtagtttta |
404 |
Q |
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|||| |||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||| |||||||||||| |
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| T |
43658577 |
cctcatcctactcgtgtgttgaaatgctggcaagacatgtctggttataaacagtttgtagttgaagtagtttta |
43658651 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 431 - 501
Target Start/End: Original strand, 43658730 - 43658800
Alignment:
| Q |
431 |
tgaagattttttctctcccaatgatttcaattgtgaatgtggtggttaggaagtatttcatagaatatagt |
501 |
Q |
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| T |
43658730 |
tgaagattttttctctcccaatgatttctattgtgaatgtggtggctaggaagtatttcattgaatatagt |
43658800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 231 - 388
Target Start/End: Original strand, 23052477 - 23052634
Alignment:
| Q |
231 |
tggtgcttaagatggcctaatagtcttcagattggtcttcttcgtggggtttccgatcattacccgcttcagttgtcggtggatgaggaaaattggggtc |
330 |
Q |
| |
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||||||||||||||||| || | |||||||||| |||||| | ||| || || ||||| | ||| ||| ||| || |||||| ||||||||| ||| | |
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| T |
23052477 |
tggtgcttaagatggccaaactgccttcagattgctcttctccatggtgtatcggatcactgccctctttagtagtttgtggataaggaaaatttgggac |
23052576 |
T |
|
| Q |
331 |
ctcgtcctactcgtgtgtggaaatgctggcaagacatgcctggttataagcagtttgt |
388 |
Q |
| |
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| ||||| |||| ||| ||| || |||||||| ||||||||||||||||||||||| |
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|
| T |
23052577 |
cgcgtccgtctcgaatgttgaagtgttggcaagagatgcctggttataagcagtttgt |
23052634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 285 - 388
Target Start/End: Complemental strand, 31677528 - 31677425
Alignment:
| Q |
285 |
gatcattacccgcttcagttgtcggtggatgaggaaaattggggtcctcgtcctactcgtgtgtggaaatgctggcaagacatgcctggttataagcagt |
384 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||| ||||| || ||||| ||| | || |||||| |||||||||||||| ||||| || |||| |
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| T |
31677528 |
gatcattgtccgcttcagttgtcggttgatgaggaaaactggggaccgcgtccaactagaatgctgaaatgttggcaagacatgccgggttacaaacagt |
31677429 |
T |
|
| Q |
385 |
ttgt |
388 |
Q |
| |
|
|||| |
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|
| T |
31677428 |
ttgt |
31677425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 285 - 388
Target Start/End: Original strand, 3542644 - 3542747
Alignment:
| Q |
285 |
gatcattacccgcttcagttgtcggtggatgaggaaaattggggtcctcgtcctactcgtgtgtggaaatgctggcaagacatgcctggttataagcagt |
384 |
Q |
| |
|
||||||| ||||||||| ||||||| ||||||||||||||||| || ||||| ||| | || |||||| |||||||| ||||| |||||||| |||| |
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| T |
3542644 |
gatcattgtccgcttcagctgtcggttgatgaggaaaattggggaccgcgtccaactagaatgctgaaatgttggcaagatatgccgggttataaacagt |
3542743 |
T |
|
| Q |
385 |
ttgt |
388 |
Q |
| |
|
|||| |
|
|
| T |
3542744 |
ttgt |
3542747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 388
Target Start/End: Complemental strand, 5811178 - 5811075
Alignment:
| Q |
285 |
gatcattacccgcttcagttgtcggtggatgaggaaaattggggtcctcgtcctactcgtgtgtggaaatgctggcaagacatgcctggttataagcagt |
384 |
Q |
| |
|
||||||| ||||||||||| || ||||||||| |||||||||| || ||||| || | ||| ||||| |||||||| ||||||| |||||||||| |
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| T |
5811178 |
gatcattgtccgcttcagttatctgtggatgagaaaaattggggaccccgtccgtctagaatgttaaaatgttggcaagatttgcctggctataagcagt |
5811079 |
T |
|
| Q |
385 |
ttgt |
388 |
Q |
| |
|
|||| |
|
|
| T |
5811078 |
ttgt |
5811075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 285 - 385
Target Start/End: Complemental strand, 6825950 - 6825850
Alignment:
| Q |
285 |
gatcattacccgcttcagttgtcggtggatgaggaaaattggggtcctcgtcctactcgtgtgtggaaatgctggcaagacatgcctggttataagcagt |
384 |
Q |
| |
|
||||||| |||| | |||||||| |||||||||||||||||||| || ||||| || | || |||||| |||||||| ||| | ||||||||||||| |
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| T |
6825950 |
gatcattgcccgttgcagttgtctgtggatgaggaaaattggggaccccgtccgtctagaatgctgaaatgttggcaagagatgtcgggttataagcagt |
6825851 |
T |
|
| Q |
385 |
t |
385 |
Q |
| |
|
| |
|
|
| T |
6825850 |
t |
6825850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 379
Target Start/End: Original strand, 17603942 - 17603971
Alignment:
| Q |
350 |
gaaatgctggcaagacatgcctggttataa |
379 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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|
| T |
17603942 |
gaaatgctggcaagacatgcctggttataa |
17603971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 501
Target Start/End: Complemental strand, 34314327 - 34314262
Alignment:
| Q |
437 |
ttttttctctcccaatgatttcaattgtgaatgtggtggt-taggaagtatttcatagaatatagt |
501 |
Q |
| |
|
|||||| ||||||||||| ||||| || |||||| ||| ||||||||||||||||||||||||| |
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|
| T |
34314327 |
ttttttttctcccaatgacttcaactgcgaatgtcgtgtactaggaagtatttcatagaatatagt |
34314262 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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