View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12523_high_4 (Length: 385)
Name: NF12523_high_4
Description: NF12523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12523_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 377
Target Start/End: Original strand, 27909497 - 27909857
Alignment:
| Q |
18 |
tattctttatggtggattaaagctggtaacatcaactttgtttatggctttagttcatggttgtcaagctcattgttgtgtttgggcattggctaatcgc |
117 |
Q |
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| T |
27909497 |
tattctttatggtggattaaagccggtaacatcaactttgtttatggctttagttcatggtggtcaaactcattgttgtgtttggacattggctaatcgt |
27909596 |
T |
|
| Q |
118 |
tttttgtaataatgacaggttgtaattattagaggtcttcttagtacatcttatgctttggagacttcatatccgtaggtgaaaatgtcgatccaatacc |
217 |
Q |
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| T |
27909597 |
tttttgtaataatgacaggttgtaattattaggggccttcttagtacaccttatgctttggagacttcatatccgtcggtgaaaatgtcgatccaatacc |
27909696 |
T |
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| Q |
218 |
gtattactccattaaattaaatatgtacgaaaactgtac-cnnnnnnnttatttatcatgactcgtgacattactctgcggagatatctgaatctttttg |
316 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27909697 |
gtataactccattaaattaaatatgtacgaaaactgtacaaaaaaaaattatttatcatgactcgtgacattactctgcggagatatctgaatcttttca |
27909796 |
T |
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| Q |
317 |
agtgtttgtttcc-agagatagtgaaatcttttgtatgatccgtatagttcagccctttgct |
377 |
Q |
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| T |
27909797 |
agtgtctgtttccaagagatagtgaaat-ttttgtatgatccgtatagttcagcccattgct |
27909857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 5492544 - 5492710
Alignment:
| Q |
18 |
tattctttatggtggattaaagctggtaacatcaactttgtttatggctttagttcatggttgtcaag-ctcattgttgtgtttgggcattggctaatcg |
116 |
Q |
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| T |
5492544 |
tattctttatggcggcttaaagctagtaatgccaactttttttatggctatagttcgtggtggtcaagtctc-ttgttgtgtttgagcattgactaattg |
5492642 |
T |
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| Q |
117 |
ctttttgtaataatgacaggttgtaattattagaggtcttcttagtacatcttatgctttggagactt |
184 |
Q |
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| T |
5492643 |
ctttttgtaacaatgacatcatataattattaggggtctccttgatacatcttgtgctttgaagactt |
5492710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 40882367 - 40882312
Alignment:
| Q |
93 |
ttgtgtttgggcattggctaatcgctttttgtaataatgacaggttgtaattattag |
149 |
Q |
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| T |
40882367 |
ttgtgtttgg-cattggctaattgttatttgtaacattgacaggttgtaattattag |
40882312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 51 - 159
Target Start/End: Original strand, 29140384 - 29140491
Alignment:
| Q |
51 |
aactttgtttatggctttagttcatggttgtcaagctcattgttgtgtttgggcattggctaatcgctttttgtaataatgacaggttgtaattattaga |
150 |
Q |
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|||||||||| ||| ||||||||||||| |||| || | ||| | ||||||| ||||||||||| |||| | |||||| ||||||||||||| ||||||| |
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| T |
29140384 |
aactttgtttttggatttagttcatggtggtcacgccccttgatttgtttggacattggctaattgcttct-gtaatattgacaggttgtaactattaga |
29140482 |
T |
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| Q |
151 |
ggtcttctt |
159 |
Q |
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||||||||| |
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| T |
29140483 |
ggtcttctt |
29140491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 187
Target Start/End: Original strand, 5998188 - 5998328
Alignment:
| Q |
46 |
acatcaactttgtttatggctttagttcatggttgtcaagctcattgttgtgtttgggcattggctaatcgctttttgtaataatgacaggttgtaatta |
145 |
Q |
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||||||| |||||||||||||||| | |||| ||||| | | |||||||||||||| |||||||||| | || |||||| |||||| ||||||| | |
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| T |
5998188 |
acatcaattttgtttatggctttattgggtggtggtcaaaccctttgttgtgtttgggtattggctaattgtttcatgtaat-ctgacagtttgtaataa |
5998286 |
T |
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| Q |
146 |
ttagaggtcttcttagtacatcttatgctttggagacttcat |
187 |
Q |
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|||| || |||||| ||||| ||| || | ||||||||||| |
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| T |
5998287 |
ttaggggacttcttggtacaccttgtgttaaggagacttcat |
5998328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 190
Target Start/End: Original strand, 54025184 - 54025345
Alignment:
| Q |
23 |
tttatggtggattaaagctggtaacatcaactttgtttatggctttagttcatggttgtcaagctcattgttgtgtttgggcattggctaatcgcttttt |
122 |
Q |
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|||||||||| | |||||| ||||| ||||||||||||||| ||||| || |||| ||||||| | |||| ||||||||||||| ||||||||| ||| |
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| T |
54025184 |
tttatggtggttaaaagctagtaacgccaactttgtttatggttttagctcgtggtggtcaagccccttgtcatgtttgggcattgactaatcgctattt |
54025283 |
T |
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| Q |
123 |
gtaataatgacaggttgtaattattagaggtcttcttagtacatcttatgctttggagacttcatatc |
190 |
Q |
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|| ||| |||||||||||||| ||| | || |||||| || |||||||| ||||||| |||| |
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| T |
54025284 |
cta------acatgttgtaattattaggggtatcctcagtacacctcatgctttgaagacttcctatc |
54025345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 90 - 182
Target Start/End: Original strand, 40281467 - 40281559
Alignment:
| Q |
90 |
ttgttgtgtttgggcattggctaatcgctttttgtaataatgacaggttgtaattattagaggtcttcttagtacatcttatgctttggagac |
182 |
Q |
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| T |
40281467 |
ttgttgtgtttaggcattggctaattgctatttgtatcattgataggttgtaattattagagatttccttggtacaccttgtgctttagagac |
40281559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 149
Target Start/End: Complemental strand, 15750191 - 15750092
Alignment:
| Q |
50 |
caactttgtttatggctttagttcatggttgtcaagctcattgttgtgtttgggcattggctaatcgctttttgtaataatgacaggttgtaattattag |
149 |
Q |
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| T |
15750191 |
caactttgtttattgatttagtaggtggtggtcgagccctttgttgtgtttggatattggctaatcgctttttgtaacgttgacattttgtaattattag |
15750092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 32644978 - 32645074
Alignment:
| Q |
18 |
tattctttatggtggattaaagctggtaacatcaactttgtttatggctttagttcatggttgtcaagctcattgttgtgtttgggcattggctaat |
114 |
Q |
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| T |
32644978 |
tattctttatggtggctgaaagttagtaacacaaactttgtcttttgctttacttcgtggtggtcaaaccctttgttatgtttgggcattagctaat |
32645074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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