View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12523_high_5 (Length: 381)
Name: NF12523_high_5
Description: NF12523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12523_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 32267835 - 32267474
Alignment:
| Q |
1 |
gacgcataaagggcttttttgtgttgggttacaaacctctaacaaaccgatcatgctatgcacgttgttatcattgtgcatgcaacaaataatgttgaac |
100 |
Q |
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| T |
32267835 |
gacgcataaagggcttttttgtgttgggttacaaacctctaacaaaccgatcatgctatgcacgttgttatcattgtgcatgcaacaaataatgttgaac |
32267736 |
T |
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| Q |
101 |
tctgaattttcaggagtgttttggatcgtcctcactcccccgtcatgtatacttcttaccattgtcacgcgagagccatgcttatacatgttttttatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32267735 |
tctgaattttcaggagtgttttggatcgtcctcactcccccgtcatgtatacttcttaccattgtcacgcgagagccatgcttatacatgttttttatca |
32267636 |
T |
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| Q |
201 |
aaggtatgcatatgccggtcatcaccaccacatatagaaccatctggctgtatacttcattattaataacctgcaaaaatagttgatgaaaaaacgttgt |
300 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32267635 |
aaggtatgcatatcccggtcatcaccaccacatatagaaccatctggctgtatacttcattattaataacctgcaaaaatagttgatgaaaaaacgttgt |
32267536 |
T |
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| Q |
301 |
aaatttaattgattgtcatggtcacattatttaagattgtagtcaaatgcagttgattcaac |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32267535 |
aaatttaattgattgtcatggtcacattatttaagattgtagtcaaatgcagttgattcaac |
32267474 |
T |
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