View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12523_high_6 (Length: 372)

Name: NF12523_high_6
Description: NF12523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12523_high_6
NF12523_high_6
[»] chr2 (6 HSPs)
chr2 (1-279)||(20926691-20926970)
chr2 (2-279)||(20934046-20934353)
chr2 (2-279)||(20952602-20952897)
chr2 (2-279)||(39273671-39273942)
chr2 (277-341)||(20925978-20926042)
chr2 (3-141)||(20923231-20923369)
[»] chr1 (16 HSPs)
chr1 (4-144)||(3218662-3218802)
chr1 (7-142)||(3372443-3372578)
chr1 (3-142)||(3361471-3361610)
chr1 (16-122)||(3345323-3345429)
chr1 (2-149)||(4323251-4323398)
chr1 (3-144)||(2006205-2006346)
chr1 (3-149)||(4335151-4335297)
chr1 (1-136)||(3349141-3349276)
chr1 (2-89)||(6601893-6601980)
chr1 (3-89)||(6592642-6592728)
chr1 (4-89)||(2011768-2011853)
chr1 (3-70)||(2010377-2010444)
chr1 (1-136)||(2948604-2948739)
chr1 (206-252)||(4335353-4335399)
chr1 (4-136)||(3340267-3340399)
chr1 (11-89)||(2019577-2019655)
[»] chr4 (1 HSPs)
chr4 (3-142)||(21237288-21237427)
[»] chr5 (1 HSPs)
chr5 (2-143)||(17969613-17969754)


Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 20926970 - 20926691
Alignment:
Q  1 actatcaaacacaagatttggtagtgtgtaccctttgttcctccatttttt-agataaaacacttgttctcgctgcttccctaattggcatgtaagttag 99  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  20926970 actatcaaagacaagatttggtagtgtgtaccctttgttcctccatttttttagataaaacacttgttctcgctgcttccctaattggcacgtaagttag 20926871  T
Q  100 aatctgatctattacatgatcaggtaagcaactaattctatccggatccggttccacatcaatcatttttctgggagtagactttgtttgttttcttccc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  20926870 aatctgatctattacatgatcaggtaagcaactaattctatccggatccggttccacatcaatcatttttctgggagaagactttgtttgttttcttccc 20926771  T
Q  200 tgttcaaacaaaggtacatacacgaatcagaaaacaaactaggttagtgtatacaggtatctatgtatacatacaagaat 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  20926770 tgttcaaacaaaggtacatacacgaatcagaaaacaaactaggttagtgtatagaggtatctatgtgtacatacaagaat 20926691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 2 - 279
Target Start/End: Complemental strand, 20934353 - 20934046
Alignment:
Q  2 ctatcaaacacaagatttggtagtgtgtaccctttgttcctccattttttagataaaacacttgttctcgctgcttccctaattggcatgtaagttagaa 101  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||    
T  20934353 ctatcaaacacaagatttgggagtgtgtaccatttgttcctccattttttagataaaacacttgttctcactgcttccctaattggcaagtaagtcagaa 20934254  T
Q  102 tctgatctattacatgatcaggtaagcaactaattctatccggatccgg------------ttccacatcaatcatttttctgggagtagactttgtttg 189  Q
    |||| |||||||||||| | ||||||||||| |||||||| ||||||||            |||||||||||||| ||||| ||||||||||||||||||    
T  20934253 tctggtctattacatgacctggtaagcaacttattctatcaggatccggttccggttctggttccacatcaatcacttttcggggagtagactttgtttg 20934154  T
Q  190 ttttcttccctg------------------ttcaaacaaaggtacatacacgaatcagaaaacaaactaggttagtgtatacaggtatctatgtatacat 271  Q
    ||||||||||||                  ||||||||||||||  ||||| | ||||||||||||||||||||||| ||| |||||||||||||| |||    
T  20934153 ttttcttccctggagatagatatattcatattcaaacaaaggtaagtacacaattcagaaaacaaactaggttagtgcatataggtatctatgtatgcat 20934054  T
Q  272 acaagaat 279  Q
    ||||||||    
T  20934053 acaagaat 20934046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 2 - 279
Target Start/End: Complemental strand, 20952897 - 20952602
Alignment:
Q  2 ctatcaaacacaagatttggtagtgtgtaccctttgttcctccattttttagataaaacacttgttctcgctgcttccctaattggcatgtaagttagaa 101  Q
    |||||||||||||||||||| ||||||| || |||||||||||||||| |||||||||||||||||||| |||| ||||||||| ||| |||||| ||||    
T  20952897 ctatcaaacacaagatttggaagtgtgttccatttgttcctccattttctagataaaacacttgttctcactgcatccctaatttgcaagtaagtcagaa 20952798  T
Q  102 tctgatctattacatgatcaggtaagcaactaattctatccggatccggttccacatcaatcatttttctgggagtagactttgtttgttttcttccctg 201  Q
    ||||||||||||||||| | ||||||||||| ||||||||||||||||||| | ||||||| |  |||  ||||||||| ||| |||||||| |||||||    
T  20952797 tctgatctattacatgacctggtaagcaacttattctatccggatccggttgctcatcaataaccttttggggagtagaatttttttgtttttttccctg 20952698  T
Q  202 ------------------ttcaaacaaaggtacatacacgaatcagaaaacaaactaggttagtgtatacaggtatctatgtatacatacaagaat 279  Q
                      ||||||||||||||||||| | ||||||| |||||||| |||||||||||| |||||||||||||| |||||||||||    
T  20952697 tagatagatatattcatattcaaacaaaggtacatacgcaaatcagataacaaactcggttagtgtatataggtatctatgtatgcatacaagaat 20952602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 2 - 279
Target Start/End: Complemental strand, 39273942 - 39273671
Alignment:
Q  2 ctatcaaacacaagatttggtagtgtgtaccctttgttcctccattttttagataaaacacttgttctcgctgcttccctaattggcatgtaagttagaa 101  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||   | || ||||||||||||||| |||||||||||||||||| | |||  ||||    
T  39273942 ctatcaaacacaagatttggtagtgtgtaccatttgtacctccattggctggacaaaacacttgttctcactgcttccctaattggcaagcaagacagaa 39273843  T
Q  102 tctgatctattacatgatcaggtaagcaactaattctatccggatccggttccacatcaatcatttttctgggagtagactttgtttgttttcttccctg 201  Q
    ||||||||||||||||| | ||||||||||||||||||||| | || |      ||||||| | ||||| || |||||||||| || ||||||||||||     
T  39273842 tctgatctattacatgacccggtaagcaactaattctatccagctctg------catcaattacttttcgggtagtagactttcttcgttttcttccctt 39273749  T
Q  202 ttcaaacaaaggtacatacacgaatcagaaaacaaactaggttagtgtatacaggtatctatgtatacatacaagaat 279  Q
    |  | | | |  | || ||| |||||| ||||||||||||||||||||||| | ||||||| |||| |||||||||||    
T  39273748 tagatagatatattcaaacaggaatcaaaaaacaaactaggttagtgtatatatgtatctaagtatgcatacaagaat 39273671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 277 - 341
Target Start/End: Complemental strand, 20926042 - 20925978
Alignment:
Q  277 aatgtatcaacattctagtcataaaatttgtgaaactaggcacttggttcacaagttgggatata 341  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  20926042 aatgtatcaacattctagttataaaatttgtgaaactaggcacttggttcacaagctgggatata 20925978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 3 - 141
Target Start/End: Complemental strand, 20923369 - 20923231
Alignment:
Q  3 tatcaaacacaagatttggtagtgtgtaccctttgttcctccattttttagataaaacacttgttctcgctgcttccctaattggcatgtaagttagaat 102  Q
    |||| ||||||||||  ||| ||||| ||| ||| ||||||||||| ||||||||||||||||||||| |||||||| | |||| || |   |  ||||     
T  20923369 tatcgaacacaagatccggttgtgtggaccattttttcctccatttgttagataaaacacttgttctccctgcttccttgattgacaagcgtgaaagaaa 20923270  T
Q  103 ctgatctattacatgatcaggtaagcaactaattctatc 141  Q
     || ||||||| |||||| ||||||||||||||||||||    
T  20923269 atggtctattatatgatctggtaagcaactaattctatc 20923231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 4 - 144
Target Start/End: Original strand, 3218662 - 3218802
Alignment:
Q  4 atcaaacacaagatttggtagtgtgtaccctttgttcctccattttttagataaaacacttgttctcgctgcttccctaattggcatgtaagttagaatc 103  Q
    ||||||||||| |||||||||||||| || ||| ||||||||||   | || |||||||||||| || |||||||||||||||||| ||| |  ||||||    
T  3218662 atcaaacacaatatttggtagtgtgtgccatttattcctccattcactggacaaaacacttgttttcactgcttccctaattggcaagtatgagagaatc 3218761  T
Q  104 tgatctattacatgatcaggtaagcaactaattctatccgg 144  Q
    ||||||||||||||| | |||||||||||||||||||||||    
T  3218762 tgatctattacatgacctggtaagcaactaattctatccgg 3218802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 7 - 142
Target Start/End: Complemental strand, 3372578 - 3372443
Alignment:
Q  7 aaacacaagatttggtagtgtgtaccctttgttcctccattttttagataaaacacttgttctcgctgcttccctaattggcatgtaagttagaatctga 106  Q
    |||||||||||||||||||||||||| ||||||||||||  |  | |||||||||||||||||| |||||||  |||||||||||   |  |||||||||    
T  3372578 aaacacaagatttggtagtgtgtaccatttgttcctccagctgctggataaaacacttgttctcactgcttctttaattggcatgagtgagagaatctga 3372479  T
Q  107 tctattacatgatcaggtaagcaactaattctatcc 142  Q
    |||||||||||| | |||||||||||||||||||||    
T  3372478 tctattacatgacctggtaagcaactaattctatcc 3372443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 3 - 142
Target Start/End: Complemental strand, 3361610 - 3361471
Alignment:
Q  3 tatcaaacacaagatttggtagtgtgtaccctttgttcctccattttttagataaaacacttgttctcgctgcttccctaattggcatgtaagttagaat 102  Q
    ||||||| |||||||||||||| ||||||| |||||| ||||||||  | ||||||| |||||||||| |||||||| | ||||||| ||| |  |  ||    
T  3361610 tatcaaatacaagatttggtagcgtgtaccatttgttactccatttgctggataaaatacttgttctcactgcttccttgattggcaagtatgacaagat 3361511  T
Q  103 ctgatctattacatgatcaggtaagcaactaattctatcc 142  Q
    ||| |||||||| ||||| |||||||||||||||||||||    
T  3361510 ctggtctattacgtgatctggtaagcaactaattctatcc 3361471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 3345323 - 3345429
Alignment:
Q  16 atttggtagtgtgtaccctttgttcctccattttttagataaaacacttgttctcgctgcttccctaattggcatgtaagttagaatctgatctattaca 115  Q
    |||||||| |||||||  |||||| ||||||||||| |||| ||||||| ||||| |||||||||||||||||| ||||| ||||||||| |||| ||||    
T  3345323 atttggtattgtgtacaatttgtttctccattttttggatataacacttattctcactgcttccctaattggcaagtaagatagaatctggtctactaca 3345422  T
Q  116 tgatcag 122  Q
    |||||||    
T  3345423 tgatcag 3345429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 2 - 149
Target Start/End: Original strand, 4323251 - 4323398
Alignment:
Q  2 ctatcaaacacaagatttggtagtgtgtaccctttgttcctccattttttagataaaacacttgttctcgctgcttccctaattggcatgtaagttagaa 101  Q
    ||||||| |||||||||||| ||||| |||| ||| |||||||| ||  | || ||||||||||||||| |||| |||||||| |||| |||||  | ||    
T  4323251 ctatcaagcacaagatttggaagtgtataccattttttcctccaattcctcgacaaaacacttgttctcactgcgtccctaatcggcaagtaagacataa 4323350  T
Q  102 tctgatctattacatgatcaggtaagcaactaattctatccggatccg 149  Q
    |||||||| |||||||| | || || ||||||||||||||||| ||||    
T  4323351 tctgatctgttacatgacctggcaaccaactaattctatccggttccg 4323398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 3 - 144
Target Start/End: Complemental strand, 2006346 - 2006205
Alignment:
Q  3 tatcaaacacaagatttggtagtgtgtaccctttgttcctccattttttagataaaacacttgttctcgctgcttccctaattggcatgtaagttagaat 102  Q
    ||||||||||||||||||||| ||||  || ||||| ||||||||| || |||||||||||||||||| | |||||||||||||||| ||  |  |||||    
T  2006346 tatcaaacacaagatttggtattgtggcccatttgtacctccatttgttggataaaacacttgttctcacagcttccctaattggcaagtgtgacagaat 2006247  T
Q  103 ctgatctattacatgatcaggtaagcaactaattctatccgg 144  Q
    ||  |||||||||| | |  ||||  ||||||||||||||||    
T  2006246 cttgtctattacatcacctagtaaataactaattctatccgg 2006205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 3 - 149
Target Start/End: Original strand, 4335151 - 4335297
Alignment:
Q  3 tatcaaacacaagatttggtagtgtgtaccctttgttcctccattttttagataaaacacttgttctcgctgcttccctaattggcatgtaagttagaat 102  Q
    ||||||| ||||||||||| ||||| |||| ||| |||||||| ||  | || ||||||||||||||| | || |||||||| ||||  ||||  | |||    
T  4335151 tatcaaatacaagatttggaagtgtataccattttttcctccaattcctcgacaaaacacttgttctcaccgcgtccctaatcggcaaataagacataat 4335250  T
Q  103 ctgatctattacatgatcaggtaagcaactaattctatccggatccg 149  Q
    ||| |||||||||||| | ||||| ||||||||||||||||| ||||    
T  4335251 ctggtctattacatgacctggtaaccaactaattctatccggttccg 4335297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 3349276 - 3349141
Alignment:
Q  1 actatcaaacacaagatttggtagtgtgtaccctttgttcctccattttttagataaaacacttgttctcgctgcttccctaattggcatgtaagttaga 100  Q
    ||||||||||||||||| |||||||||| ||| ||| ||||||||||   | ||||| |||||||||||  ||| |||| |||||| || ||  |  |||    
T  3349276 actatcaaacacaagatctggtagtgtggaccatttcttcctccattcgctcgataacacacttgttcttactgattccttaattgtcaagtgtgagaga 3349177  T
Q  101 atctgatctattacatgatcaggtaagcaactaatt 136  Q
    ||||| ||||| | |||||| |||||||||||||||    
T  3349176 atctgctctataagatgatctggtaagcaactaatt 3349141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 6601893 - 6601980
Alignment:
Q  2 ctatcaaacacaagatttggtagtgtgtaccctttgttcctccattttttagataaaacacttgttctcgctgcttccctaattggca 89  Q
    |||||||||||||||||||| ||||||  || ||||| |||||||||  | ||||||| |||||||||| |||||||| |||||||||    
T  6601893 ctatcaaacacaagatttggaagtgtggcccatttgtacctccatttggttgataaaatacttgttctcactgcttccttaattggca 6601980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 6592642 - 6592728
Alignment:
Q  3 tatcaaacacaagatttggtagtgtgtaccctttgttcctccattttttagataaaacacttgttctcgctgcttccctaattggca 89  Q
    ||||||||||||||||||| ||||||  || ||||| |||||| ||  ||||||||| ||||||||| ||||||||| |||||||||    
T  6592642 tatcaaacacaagatttggaagtgtggtccatttgtacctccagttggtagataaaatacttgttctggctgcttccttaattggca 6592728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 2011853 - 2011768
Alignment:
Q  4 atcaaacacaagatttggtagtgtgtaccctttgttcctccattttttagataaaacacttgttctcgctgcttccctaattggca 89  Q
    |||||||||||||||||||| ||||  || ||||| ||||||||| || ||||||| |||||||||| |  | |||||||||||||    
T  2011853 atcaaacacaagatttggtattgtgatccatttgtacctccatttgtttgataaaatacttgttctcacaacatccctaattggca 2011768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 2010444 - 2010377
Alignment:
Q  3 tatcaaacacaagatttggtagtgtgtaccctttgttcctccattttttagataaaacacttgttctc 70  Q
    ||||||||||||||||||||| ||||  || ||||| ||||||||| ||  |||||||||||||||||    
T  2010444 tatcaaacacaagatttggtattgtggtccatttgtacctccatttgttgcataaaacacttgttctc 2010377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 2948604 - 2948739
Alignment:
Q  1 actatcaaacacaagatttggtagtgtgtaccctttgttcctccattttttagataaaacacttgttctcgctgcttccctaattggcatgtaagttaga 100  Q
    ||||||||||||||||| |||| ||||| ||| ||| ||||||||||   | ||||| ||||||||| |  |||||||| |||||| || ||  |  |||    
T  2948604 actatcaaacacaagatctggttgtgtggaccatttattcctccattcgctcgataacacacttgttgttactgcttccttaattgtcaagtgtgagaga 2948703  T
Q  101 atctgatctattacatgatcaggtaagcaactaatt 136  Q
    |||||  |||| | |||||| |||||||||||||||    
T  2948704 atctgccctataagatgatctggtaagcaactaatt 2948739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 252
Target Start/End: Original strand, 4335353 - 4335399
Alignment:
Q  206 aacaaaggtacatacacgaatcagaaaacaaactaggttagtgtata 252  Q
    |||||||||||||||| |||||||| ||||||||||||||| |||||    
T  4335353 aacaaaggtacatacatgaatcagacaacaaactaggttagagtata 4335399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 136
Target Start/End: Complemental strand, 3340399 - 3340267
Alignment:
Q  4 atcaaacacaagatttggtagtgtgtaccctttgttcctccattttttagataaaacacttgttctcgctgcttccctaattggcatgtaagttagaatc 103  Q
    |||||||||||||| |||||  ||| ||| ||| || ||||| ||  | |||||||||||||||||  |||||||| |||||| || ||  |  ||||||    
T  3340399 atcaaacacaagatctggtaaagtggaccatttctttctccaattgctcgataaaacacttgttcttactgcttccttaattgacaagtgtgagagaatc 3340300  T
Q  104 tgatctattacatgatcaggtaagcaactaatt 136  Q
     | ||||| | |||||| |||||||||||||||    
T  3340299 agctctataagatgatctggtaagcaactaatt 3340267  T

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Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 2019655 - 2019577
Alignment:
Q  11 acaagatttggtagtgtgtaccctttgttcctccattttttagataaaacacttgttctcgctgcttccctaattggca 89  Q
    ||||||||||| | ||||  || ||||| ||||||||| || |||||||||||||||||| | || |||||||| ||||    
T  2019655 acaagatttggcattgtggcccatttgtacctccatttgttggataaaacacttgttctcacagcgtccctaataggca 2019577  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 142
Target Start/End: Complemental strand, 21237427 - 21237288
Alignment:
Q  3 tatcaaacacaagatttggtagtgtgtaccctttgttcctccattttttagataaaacacttgttctcgctgcttccctaattggca--tgtaagttaga 100  Q
    |||| |||||||||||||| |  ||||||| |||||| ||||||||  | ||||| ||||||||||||  ||||||| |||||||||  ||||||  |||    
T  21237427 tatcgaacacaagatttggcatagtgtaccatttgtttctccatttgctggataatacacttgttctcaatgcttccttaattggcaagtgtaag--aga 21237330  T
Q  101 atctgatctattacatgatcaggtaagcaactaattctatcc 142  Q
    ||||| ||| |||||| | | |||||| ||||||| ||||||    
T  21237329 atctggtctgttacattacctggtaaggaactaatcctatcc 21237288  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 143
Target Start/End: Complemental strand, 17969754 - 17969613
Alignment:
Q  2 ctatcaaacacaagatttggtagtgtgtaccctttgttcctccattttttagataaaacacttgttctcgctgcttccctaattggcatgtaagttagaa 101  Q
    |||||||||||||||| |||| | ||  ||| ||| ||| |||||||  | |||||||||||||||||| |||||||| | |||| ||  || |  ||||    
T  17969754 ctatcaaacacaagatctggttgggtagaccatttcttcttccatttgctcgataaaacacttgttctccctgcttccttgattgtcaaatatgagagaa 17969655  T
Q  102 tctgatctattacatgatcaggtaagcaactaattctatccg 143  Q
    | |||| |  || |||||| |||||||||||||| |||||||    
T  17969654 tatgatgttgtagatgatcgggtaagcaactaatcctatccg 17969613  T

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