View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12523_high_9 (Length: 311)
Name: NF12523_high_9
Description: NF12523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12523_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 13 - 293
Target Start/End: Complemental strand, 13500869 - 13500589
Alignment:
| Q |
13 |
cctgcttttcaatctgggtttgttttttacaattattgacaaaaatgttggtaattaaattagggttaactggggttttagaattattgtttaggttttg |
112 |
Q |
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| T |
13500869 |
cctgcttttcaatctgggttttttttttacaattattgacaaaaatgttggtaattaaattagggttaattggggttttagaattattgtttaggttttg |
13500770 |
T |
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| Q |
113 |
ataaattgtaaatctgggtagtttgaaaaatgtaacactagaactagaatattccaagaattacgaaagaacttaagattaatatcatgtattaatttgt |
212 |
Q |
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| T |
13500769 |
ataaattgtaaatctgggtagtttgaaaaatgtaacactagaactagaatattccaagaattacgaaaggacttaagattaatatcacgtattaatttgt |
13500670 |
T |
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| Q |
213 |
taaattgagtgttcacttttaacgtatacattttgaagcagaggagtgtgtaatgtttgtaaacgcgggaggggaagcgac |
293 |
Q |
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| T |
13500669 |
taaattgagtgttcacttttaacgtatacattttgaagcagaggagtgtgtaatgtttgtaaacgcgggaggggaagcgac |
13500589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 51 - 293
Target Start/End: Original strand, 21797019 - 21797261
Alignment:
| Q |
51 |
acaaaaatgttggtaattaaattagggttaactggggttttagaattattgtttaggttttgataaattgtaaatctgggtagtttgaaaaatgtaacac |
150 |
Q |
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| T |
21797019 |
acaaaaatgttggtaattaaattagggttaattggggttttagaattattgtttaggttttgataaattgtaaatctgggtagtttgaaaaatgtaacac |
21797118 |
T |
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| Q |
151 |
tagaactagaatattccaagaattacgaaagaacttaagattaatatcatgtattaatttgttaaattgagtgttcacttttaacgtatacattttgaag |
250 |
Q |
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| T |
21797119 |
tagaactagaatattccaagaattacgaaaggacttaagattaatatcatgtattaatttgttaaattgagtgttcacttttaacgtatacattttgaag |
21797218 |
T |
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| Q |
251 |
cagaggagtgtgtaatgtttgtaaacgcgggaggggaagcgac |
293 |
Q |
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| T |
21797219 |
cagaggagtgtgtaatgtttgtaaacgtgggaggggaagcgac |
21797261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 51 - 293
Target Start/End: Original strand, 21717281 - 21717523
Alignment:
| Q |
51 |
acaaaaatgttggtaattaaattagggttaactggggttttagaattattgtttaggttttgataaattgtaaatctgggtagtttgaaaaatgtaacac |
150 |
Q |
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| T |
21717281 |
acaaaaatgttggtaattaaattagggttaattggggttttagaactattgtttaggttttgataaattgtaaatctgggtagtttgaaaaatgtaacac |
21717380 |
T |
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| Q |
151 |
tagaactagaatattccaagaattacgaaagaacttaagattaatatcatgtattaatttgttaaattgagtgttcacttttaacgtatacattttgaag |
250 |
Q |
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| T |
21717381 |
tagaactagaatattccaagaattacgaaaggacttaagattaatatcatgtattaatttgttaaattgagtgttcacttttaacgtatacattttgaag |
21717480 |
T |
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| Q |
251 |
cagaggagtgtgtaatgtttgtaaacgcgggaggggaagcgac |
293 |
Q |
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| T |
21717481 |
cagaggagtgtgtaatgtttgtaaacgtgggaggggaagcgac |
21717523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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