View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12523_low_10 (Length: 293)
Name: NF12523_low_10
Description: NF12523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12523_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 114; Significance: 7e-58; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 68 - 189
Target Start/End: Complemental strand, 3313110 - 3312989
Alignment:
| Q |
68 |
tagtaatataccataattttatatgttgtttcaataaggtcagcaatgtggtcatccatcactacgagtctataagtgttatgttatattatatgtttag |
167 |
Q |
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| T |
3313110 |
tagtaatataccataattttatatgttgtttcaataaggtcagcaatgtggtcctccatcactacgagtctataagtgttacgttatattatatgtttag |
3313011 |
T |
|
| Q |
168 |
tgggtctctgtcttttatggag |
189 |
Q |
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|||||||||||||||||||||| |
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| T |
3313010 |
tgggtctctgtcttttatggag |
3312989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 267
Target Start/End: Complemental strand, 3312946 - 3312903
Alignment:
| Q |
224 |
gtcccttaattatgtaacttgtaagccctttaactatggatgta |
267 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3312946 |
gtcctttaattatgtaacttgtaagccctttaactatggatgta |
3312903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 68 - 188
Target Start/End: Original strand, 24537500 - 24537620
Alignment:
| Q |
68 |
tagtaatataccataattttatatgttgtttcaataaggtcagcaatgtggtcatccatcactacgagtctataagtgttatgttatattatatgtttag |
167 |
Q |
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|||||||||||||| |||||||||| ||||||||||||||||||||||||| | ||||||||| |||||||| ||||||||| |||||||||||| ||| |
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| T |
24537500 |
tagtaatataccatgattttatatgatgtttcaataaggtcagcaatgtggccccccatcactatgagtctatgagtgttatggtatattatatgtctag |
24537599 |
T |
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| Q |
168 |
tgggtctctgtcttttatgga |
188 |
Q |
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||| ||| ||||||||||||| |
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| T |
24537600 |
tggatctttgtcttttatgga |
24537620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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