View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12523_low_11 (Length: 273)
Name: NF12523_low_11
Description: NF12523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12523_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 86 - 245
Target Start/End: Complemental strand, 9163536 - 9163377
Alignment:
| Q |
86 |
acaaataacttaatttttagactgttttcctagtgccgttgttgaaatttttcattattttattggatcaggcaccaaaatcatctggaaaagatgtaaa |
185 |
Q |
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| T |
9163536 |
acaaataacttaatttttagactgttttcctagtgccgttgttgaaatttttcattattttattggatcaggcaccaaaatcatctggaaaagatgtaaa |
9163437 |
T |
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| Q |
186 |
tggatctacgtccaaaagtaatggacctccaagaggtacaccaccccagtcatcaaacgc |
245 |
Q |
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| T |
9163436 |
tggatctacgtccaaaagtaatggacctccaagaggtacaccaccccagtcatcaaacgc |
9163377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 88 - 255
Target Start/End: Complemental strand, 9150898 - 9150731
Alignment:
| Q |
88 |
aaataacttaatttttagactgttttcctagtgccgttgttgaaatttttcattattttattggatcaggcaccaaaatcatctggaaaagatgtaaatg |
187 |
Q |
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| T |
9150898 |
aaataacttaatttttagagcgttttcctattgctgttgttaaaattcttcattattttattgaatcaggaaccaaaatcttctgcaaaagatgtcaatg |
9150799 |
T |
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| Q |
188 |
gatctacgtccaaaagtaatggacctccaagaggtacaccaccccagtcatcaaacgctgggtcttct |
255 |
Q |
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| T |
9150798 |
gatcttcgtccaaaagtaatgcacctccaagaggtacaccaccaccgtcatcaaactctgggtcttct |
9150731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 71
Target Start/End: Complemental strand, 9163587 - 9163557
Alignment:
| Q |
41 |
ttatcattcaacatattttaaacaaaacttg |
71 |
Q |
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| T |
9163587 |
ttatcattcaacatattttaaacaaaacttg |
9163557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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