View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12524_high_10 (Length: 304)
Name: NF12524_high_10
Description: NF12524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12524_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 5313658 - 5313933
Alignment:
| Q |
1 |
tgattttttcggtatgaattaatgaagaggttgaaaaatgagagcgaaaatttgaccgttacgttgttatggtgtgaagagaagagtgtaactgtagttc |
100 |
Q |
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| T |
5313658 |
tgattttttcggtatgaattaatgaagaggttgaaaaatgagagcgaaaatttgaccgttacgttgttatggtgtgaagagaagagtgtaactgtagttc |
5313757 |
T |
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| Q |
101 |
gtattagtgtgagagagtcacacgcagcgtgattgtggttttggatttgagaaaaattaacaccgaaaatgtgaaggtggaaggtgaggtaccagaaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5313758 |
gtattagtgtgagagagtcacacgcagcgtgattgtggttttggatttgagaaaaattaacaccgaaaatgtgaaggtggaaggtgaggtaccagaaaga |
5313857 |
T |
|
| Q |
201 |
gtgatgtcaaaattgtacacacgtacgcgcgttgttgatgagaattaatgcactcgccgtgacttcagttcttctt |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5313858 |
gtgatgtcaaaattgtacacacgtacgcgcgttgttgatgagaattaatgcactcgccgtgacttcagttcttctt |
5313933 |
T |
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