View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12524_high_2 (Length: 352)
Name: NF12524_high_2
Description: NF12524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12524_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 12736605 - 12736265
Alignment:
| Q |
1 |
cagaagacatggacacttctaggacaacctattatttgtccgcgacgagacctggttcggaggtttcagccgagattgcagccgggcttgcggcatcatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
12736605 |
cagaagacatggacacttctaggacaacctattatttgtccgcgacaagacctggttcggaggtttcagccgagattgcagccgcgcttgcggcgtcatc |
12736506 |
T |
|
| Q |
101 |
cattgcattcagaaacattgatcctggatattctagtattcttcttgctagggctaaacgggtatacatttatttaattatgtcctataattttnnnnnn |
200 |
Q |
| |
|
|||||| |||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | || | |
|
|
| T |
12736505 |
cattgctttcagaaacattaatcgtggatattctaggattcttcttgctagggctaaacgggtatacatttatttaattatgtcaaagaaagtaactttc |
12736406 |
T |
|
| Q |
201 |
ntattaatggtagcaatttatttccattgctgatattttatttctcaaattgcaactaattattatatctctataataatatttaggtatttgactttgc |
300 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12736405 |
tcaaatttggtagcaatttatttccattgctgatattttatttctcaaattgcaactaattattatatctctataataatatttaggtatttgactttgc |
12736306 |
T |
|
| Q |
301 |
aaattatcaccgtgggtcttacaataattccacaggttctg |
341 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
12736305 |
aaattatcaccgtgggtcttacaataatgccataggttctg |
12736265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 12765896 - 12765719
Alignment:
| Q |
1 |
cagaagacatggacacttctaggacaacctattatttgtccgcgacgagacctggttcggaggtttcagccgagattgcagccgggcttgcggcatcatc |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||| | || || |||||||||||||||||||||||||| |||| |||||||| ||||| |
|
|
| T |
12765896 |
cagaagacatggacacttctagaacaacctattatgtgtccgaaaataggccaggttcggaggtttcagccgagattgcggccgcacttgcggcgtcatc |
12765797 |
T |
|
| Q |
101 |
cattgcattcagaaacattgatcctggatattctagtattcttcttgctagggctaaacgggtatacatttatttaat |
178 |
Q |
| |
|
||||||||| ||||| |||||| | |||||||| | | ||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
12765796 |
cattgcatttagaaaaattgatgatcaatattctaatgtccttcttgctagggctaaacaggtatatatttatttaat |
12765719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University