View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12524_high_5 (Length: 332)
Name: NF12524_high_5
Description: NF12524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12524_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 3 - 331
Target Start/End: Complemental strand, 29736710 - 29736382
Alignment:
| Q |
3 |
catctccaagaatataatatacatagcataagattaagattaagatatagactcaattcattcaaatcaagcaacaaaaatttaagctccacacaaatta |
102 |
Q |
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| T |
29736710 |
catctccaatcatataatatacatagcataagattaagattaagatatagactcaattcattcaaatcaagcaacaaaaatttaagctccacacaaatta |
29736611 |
T |
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| Q |
103 |
atcttagttttaatttgctcactatgttctggatcagctaactagcttcaatagtaagttgttcattttttagaatttaattactatttctacttgatac |
202 |
Q |
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| T |
29736610 |
atcttagttttaatttgctcactatgttctggatcagctaactagcttcaatagtaagttgttcattttttagaatttaattactatttctacttgatac |
29736511 |
T |
|
| Q |
203 |
tttaattttaattgcttgttatttgtttccttttcagttcaattcaactaaacagaagcgaagcaaaatgaattaccatgttccagatttcgatattcaa |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29736510 |
tttaattttaattgcttgttatttgtttccttttcagttcaattcaactaaacagaagcgaagcaaaatgaattaccatgttccagatttcgatattcaa |
29736411 |
T |
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| Q |
303 |
atggatgatgaagatgaataccctataca |
331 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
29736410 |
atggatgatgaagatgaataccctataca |
29736382 |
T |
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