View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12524_low_1 (Length: 493)
Name: NF12524_low_1
Description: NF12524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12524_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 421; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 18 - 478
Target Start/End: Complemental strand, 1460154 - 1459694
Alignment:
| Q |
18 |
ggaggctgtggaggaggaggtagataggatcagcattttaccagatgatatcctagttcacattctctctcctcttcccaccaaacaagcctttgtgact |
117 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1460154 |
ggaggctatggaggaggaggtagataggatcagcattttaccagatgatatcctagttcacattctctctcctcttcccaccaaacaagcctttgtgact |
1460055 |
T |
|
| Q |
118 |
tccgttctttcaaagagatggaagaatctatggtgtctcgttccagctctcgaattcgtcggaaccaaaacggtgacggtaaccaaatacgttgtttcgc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1460054 |
tccgttctttcaaagagatggaagaatctatggtgtctcgttccagctctcgaatttgtcggaaccaaaacggtgacggtatccaaatacgttgtttcgc |
1459955 |
T |
|
| Q |
218 |
gacaagctgctgataatcattacatgcattattgggaaagaatataccctgaagttcctaatactatctttactagtgaaacccttgttattcttaagct |
317 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1459954 |
gacaagctgctggtaatcattacatgcataattgggaaagaatataccctgaatttcctaatactatctttactagagaaacccttgttattcttaagct |
1459855 |
T |
|
| Q |
318 |
cagtgaactttttatgggttctggattttgtaattatctcataagattaccctcactcaaaaccctacatctgaaagtcattgagtttcatcaatatgga |
417 |
Q |
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|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
1459854 |
cagtgaactttttatgggttctgggttttgtaattatctcataagattaccctcactcaaaaccctacatctgaaagacattgagtttcaacaatatgga |
1459755 |
T |
|
| Q |
418 |
gatcttgattgtcttctagagggatgtccagttcttgaagatcttcaactatatgatatat |
478 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1459754 |
gatcttgattgtcttctagagggatgtccagttcttgaagatcttcaactatatgatatat |
1459694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 275 - 478
Target Start/End: Complemental strand, 1446494 - 1446291
Alignment:
| Q |
275 |
ctaatactatctttactagtgaaacccttgttattcttaagctcagtgaactttttatgggttctggattttgtaattatctcataagattaccctcact |
374 |
Q |
| |
|
|||||||||| ||||| || |||||||||| |||||||||||||| | |||| ||||||| | | ||||||| |||||| ||||| |||||| ||||| |
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|
| T |
1446494 |
ctaatactattcttacttgtacaacccttgttgttcttaagctcagttatctttatatgggtccggcattttgttattatcccataatattaccttcact |
1446395 |
T |
|
| Q |
375 |
caaaaccctacatctgaaagtcattgagtttcatcaatatggagatcttgattgtcttctagagggatgtccagttcttgaagatcttcaactatatgat |
474 |
Q |
| |
|
||||||||||||| |||||| |||| ||||| ||| ||||||||||||| | |||||||||| | ||||||||| |||||||||||||||||||| || |
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|
| T |
1446394 |
caaaaccctacatttgaaagacattaagtttgatcgatatggagatcttaagtgtcttctagggtattgtccagttattgaagatcttcaactatatcat |
1446295 |
T |
|
| Q |
475 |
atat |
478 |
Q |
| |
|
|||| |
|
|
| T |
1446294 |
atat |
1446291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 36 - 163
Target Start/End: Original strand, 12094079 - 12094206
Alignment:
| Q |
36 |
ggtagataggatcagcattttaccagatgatatcctagttcacattctctctcctcttcccaccaaacaagcctttgtgacttccgttctttcaaagaga |
135 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||| |||||||||| ||| || |||||||||||||||||||||| ||||| |||||||||||||| |
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|
| T |
12094079 |
ggtagataggatcagcaatttaccagacgatatcctgattcacattctgtcttcttttcccaccaaacaagcctttgtcacttcaattctttcaaagaga |
12094178 |
T |
|
| Q |
136 |
tggaagaatctatggtgtctcgttccag |
163 |
Q |
| |
|
|||||| ||||||||||| |||||||| |
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|
| T |
12094179 |
tggaagcatctatggtgttacgttccag |
12094206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 37 - 151
Target Start/End: Complemental strand, 1446786 - 1446672
Alignment:
| Q |
37 |
gtagataggatcagcattttaccagatgatatcctagttcacattctctctcctcttcccaccaaacaagcctttgtgacttccgttctttcaaagagat |
136 |
Q |
| |
|
||||||||||| |||| ||||||||| ||||||||| |||| ||||||||| ||||||||||||||||||||||| | |||||| ||||||||||||||| |
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|
| T |
1446786 |
gtagataggataagcagtttaccagacgatatcctaattcaaattctctcttctcttcccaccaaacaagcctttctcacttccattctttcaaagagat |
1446687 |
T |
|
| Q |
137 |
ggaagaatctatggt |
151 |
Q |
| |
|
||||| ||||||||| |
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|
| T |
1446686 |
ggaagcatctatggt |
1446672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 36 - 147
Target Start/End: Original strand, 12104419 - 12104530
Alignment:
| Q |
36 |
ggtagataggatcagcattttaccagatgatatcctagttcacattctctctcctcttcccaccaaacaagcctttgtgacttccgttctttcaaagaga |
135 |
Q |
| |
|
|||||||| |||||||| |||| |||| |||||||| |||||||||||||| |||||||||||||||||||||| | ||||| |||||||||||||| |
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|
| T |
12104419 |
ggtagatatgatcagcaatttatcagacgatatcctgattcacattctctcttttcttcccaccaaacaagcctttctcacttcaattctttcaaagaga |
12104518 |
T |
|
| Q |
136 |
tggaagaatcta |
147 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
12104519 |
tggaagcatcta |
12104530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 36 - 139
Target Start/End: Original strand, 820412 - 820515
Alignment:
| Q |
36 |
ggtagataggatcagcattttaccagatgatatcctagttcacattctctctcctcttcccaccaaacaagcctttgtgacttccgttctttcaaagaga |
135 |
Q |
| |
|
|||||||||||||| || ||||| ||||||||||| |||| ||||||||| || |||| ||||||||||||||||| |||||| ||||||||||| || |
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| T |
820412 |
ggtagataggatcaacagtttactggatgatatcctgattcatattctctcttctgttcctaccaaacaagcctttgtcacttccattctttcaaagcga |
820511 |
T |
|
| Q |
136 |
tgga |
139 |
Q |
| |
|
|||| |
|
|
| T |
820512 |
tgga |
820515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 36 - 153
Target Start/End: Original strand, 409117 - 409234
Alignment:
| Q |
36 |
ggtagataggatcagcattttaccagatgatatcctagttcacattctctctcctcttcccaccaaacaagcctttgtgacttccgttctttcaaagaga |
135 |
Q |
| |
|
|||||||||||| | | ||||||||| || || || |||||||||||||| | |||||||||||||||||||||| || ||| |||||||||||||| |
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|
| T |
409117 |
ggtagataggattggaagtttaccagacgagattctgattcacattctctcttttgttcccaccaaacaagcctttgtcacatccattctttcaaagaga |
409216 |
T |
|
| Q |
136 |
tggaagaatctatggtgt |
153 |
Q |
| |
|
|||| ||||||||||| |
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|
| T |
409217 |
tggactcatctatggtgt |
409234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 40 - 161
Target Start/End: Complemental strand, 997570 - 997449
Alignment:
| Q |
40 |
gataggatcagcattttaccagatgatatcctagttcacattctctctcctcttcccaccaaacaagcctttgtgacttccgttctttcaaagagatgga |
139 |
Q |
| |
|
||||||||| | | |||||| || || |||||| | |||||||||||| | ||||||||||||||||||| | |||||| ||||||||||| |||||| |
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|
| T |
997570 |
gataggatcggaagtttaccggacgagatcctaatccacattctctcttttgttcccaccaaacaagccttcgcaacttccattctttcaaagcgatgga |
997471 |
T |
|
| Q |
140 |
agaatctatggtgtctcgttcc |
161 |
Q |
| |
|
||||||| ||| | |||||| |
|
|
| T |
997470 |
ttaatctatagtgccacgttcc |
997449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 430 - 478
Target Start/End: Complemental strand, 975166 - 975118
Alignment:
| Q |
430 |
cttctagagggatgtccagttcttgaagatcttcaactatatgatatat |
478 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
975166 |
cttctagatggatgtccagttcttgaagatcttcaactatgttatatat |
975118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 38 - 139
Target Start/End: Complemental strand, 975723 - 975622
Alignment:
| Q |
38 |
tagataggatcagcattttaccagatgatatcctagttcacattctctctcctcttcccaccaaacaagcctttgtgacttccgttctttcaaagagatg |
137 |
Q |
| |
|
|||||||||| |||| ||| || || || ||||| ||| |||||||||| ||||||||| ||||||||| ||| |||||| ||||||||||| |||| |
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|
| T |
975723 |
tagataggattagcagttttcccgacgacatcctgattcgcattctctcttctcttcccattgaacaagcctgtgtcacttccattctttcaaagcgatg |
975624 |
T |
|
| Q |
138 |
ga |
139 |
Q |
| |
|
|| |
|
|
| T |
975623 |
ga |
975622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 467
Target Start/End: Original strand, 409673 - 409710
Alignment:
| Q |
430 |
cttctagagggatgtccagttcttgaagatcttcaact |
467 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
409673 |
cttctagatggatgtccagttcttcaagatcttcaact |
409710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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