View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12524_low_2 (Length: 206)
Name: NF12524_low_2
Description: NF12524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12524_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 64 - 197
Target Start/End: Complemental strand, 12736398 - 12736265
Alignment:
| Q |
64 |
tggtagcaatttatttccattgctgatattttatttctcaaattgcaactaattattatatctctataataatatttaggtatttgactttgcaaattat |
163 |
Q |
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| T |
12736398 |
tggtagcaatttatttccattgctgatattttatttctcaaattgcaactaattattatatctctataataatatttaggtatttgactttgcaaattat |
12736299 |
T |
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| Q |
164 |
caccgtgggtcttacaataattccacaggttctg |
197 |
Q |
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| T |
12736298 |
caccgtgggtcttacaataatgccataggttctg |
12736265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 12736461 - 12736422
Alignment:
| Q |
1 |
ttgctagggctaaacgggtatacatttatttaattatgtc |
40 |
Q |
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| T |
12736461 |
ttgctagggctaaacgggtatacatttatttaattatgtc |
12736422 |
T |
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