View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12525_high_1 (Length: 406)
Name: NF12525_high_1
Description: NF12525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12525_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 113 - 391
Target Start/End: Original strand, 43538044 - 43538322
Alignment:
| Q |
113 |
tatatatatgatttgtaacactttaaactaatcactcaagcaataatatagaactataattgtttccaaatcaatcgtaaacgattgtgttcattgtctt |
212 |
Q |
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| T |
43538044 |
tatatatatgacttgtaacactgtaaattaatcactcaagtaataatatagaactataattgtttccaaatcaatcgtaaacgattgtgttcattgtctt |
43538143 |
T |
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| Q |
213 |
gtgatttatcttttttattattcttatgttgctagttgttgttctaataaaaatgtctttgactcgtttaatcaattgtaaatttggaccatttgatttc |
312 |
Q |
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| T |
43538144 |
gtgatttatcttttttattattcttatgttgctagttgttgttctaataaaaatgtctttgactcgtttaatcaattgaaaatttggaccatttgatttc |
43538243 |
T |
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| Q |
313 |
aatcgaatggccttcgttgcattgacggcaaagaccgcaatctacaagattctttaacggtagggaatctcggtcccat |
391 |
Q |
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| T |
43538244 |
aatcgaatggccttcgttgcattgacggcaaagaccgcaatctacaagattctttaacggtagggaatctcggtcccat |
43538322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 43537979 - 43538036
Alignment:
| Q |
1 |
atcggtaaggagcgagagagttgagcgagcgtcgtgacatttgctccttttctttcat |
58 |
Q |
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| T |
43537979 |
atcggtaaggggcgagagagttgagcgaccgtcgtgacatttgctcctattctttcat |
43538036 |
T |
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