View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12525_high_2 (Length: 388)
Name: NF12525_high_2
Description: NF12525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12525_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 215 - 380
Target Start/End: Complemental strand, 46936092 - 46935926
Alignment:
| Q |
215 |
ttgtaagtctattgtattcatacaaattttgataaaaatattttgaatatctggcacagttggtatgttacagggaaaaaa-ggatttacatcattgaca |
313 |
Q |
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| T |
46936092 |
ttgtaagttgattgaatccataaaaattttgataaaaatattttgaatatctggcacagttggtatgttataggaaaaaaaagggtttacatcattgaca |
46935993 |
T |
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| Q |
314 |
attttcattttgatatggtgcaggttgttttccctagctttggttagaggtacctatcctctgtgct |
380 |
Q |
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| T |
46935992 |
attttcattttgatatggtgcaggttgttttccctagctttggtgagaggtacctatcctctgtgct |
46935926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 46936206 - 46936154
Alignment:
| Q |
145 |
aatttgttgagcctttactatgaatattgttttaggttggaatatcatctgga |
197 |
Q |
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| T |
46936206 |
aatttgttgagcctctattctgaatattgttttaggttggaatatcatctgga |
46936154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 319 - 380
Target Start/End: Original strand, 865163 - 865224
Alignment:
| Q |
319 |
cattttgatatggtgcaggttgttttccctagctttggttagaggtacctatcctctgtgct |
380 |
Q |
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| T |
865163 |
cattttgacatggtgcaggtcgtttttccaagctttggcgagaggtacctgtcctctgtgct |
865224 |
T |
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