View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12525_high_3 (Length: 381)

Name: NF12525_high_3
Description: NF12525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12525_high_3
NF12525_high_3
[»] scaffold0212 (2 HSPs)
scaffold0212 (95-169)||(27388-27462)
scaffold0212 (34-67)||(15709-15742)
[»] scaffold0015 (1 HSPs)
scaffold0015 (95-169)||(214810-214884)
[»] chr8 (1 HSPs)
chr8 (95-169)||(21957964-21958038)
[»] chr4 (1 HSPs)
chr4 (95-167)||(24749154-24749226)
[»] scaffold0082 (1 HSPs)
scaffold0082 (174-243)||(14182-14251)
[»] chr2 (2 HSPs)
chr2 (99-168)||(32858357-32858426)
chr2 (34-67)||(36499550-36499583)
[»] scaffold0221 (1 HSPs)
scaffold0221 (246-288)||(25160-25202)
[»] chr5 (1 HSPs)
chr5 (109-139)||(42451549-42451579)
[»] chr7 (1 HSPs)
chr7 (311-347)||(11593117-11593153)


Alignment Details
Target: scaffold0212 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0212
Description:

Target: scaffold0212; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 95 - 169
Target Start/End: Complemental strand, 27462 - 27388
Alignment:
Q  95 ccagaaagatattggactcttttttctttgtcggctgtaaaccaagttgcaagaccgggaatgagctttacaacc 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27462 ccagaaagatattggactcttttttctttgtcggctgtaaaccaagttgcaagaccgggaatgagctttacaacc 27388  T

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Target: scaffold0212; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 15709 - 15742
Alignment:
Q  34 ggtgcaggatccgaagcggtggctgctacaagaa 67  Q
    ||||||||||||||||||||||||||||||||||    
T  15709 ggtgcaggatccgaagcggtggctgctacaagaa 15742  T

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Target: scaffold0015 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 95 - 169
Target Start/End: Complemental strand, 214884 - 214810
Alignment:
Q  95 ccagaaagatattggactcttttttctttgtcggctgtaaaccaagttgcaagaccgggaatgagctttacaacc 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  214884 ccagaaagatattggactcttttttctttgtcggctgtaaaccaagttgcaagaccgggaatgagctttacaacc 214810  T

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Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 95 - 169
Target Start/End: Original strand, 21957964 - 21958038
Alignment:
Q  95 ccagaaagatattggactcttttttctttgtcggctgtaaaccaagttgcaagaccgggaatgagctttacaacc 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21957964 ccagaaagatattggactcttttttctttgtcggctgtaaaccaagttgcaagaccgggaatgagctttacaacc 21958038  T

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Target: chr4 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 95 - 167
Target Start/End: Original strand, 24749154 - 24749226
Alignment:
Q  95 ccagaaagatattggactcttttttctttgtcggctgtaaaccaagttgcaagaccgggaatgagctttacaa 167  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  24749154 ccagaaagatattggactcttttttctttgtcggctgtaaaccaagttgcaagatcgggaatgagctttacaa 24749226  T

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Target: scaffold0082 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0082
Description:

Target: scaffold0082; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 174 - 243
Target Start/End: Complemental strand, 14251 - 14182
Alignment:
Q  174 aacagtgttgaacggaacaacaaatatgtggatctttgtagaaaacataggacatgcgagcacaaaaagc 243  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14251 aacagcgttgaacggaacaacaaatatgtggatctttgtagaaaacataggacatgcgagcacaaaaagc 14182  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 32858357 - 32858426
Alignment:
Q  99 aaagatattggactcttttttctttgtcggctgtaaaccaagttgcaagaccgggaatgagctttacaac 168  Q
    ||||||||| || ||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||    
T  32858357 aaagatattagaatcttttttctttgtcggatgtaaaccaagttgcaagaccgagaatgagctttgcaac 32858426  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 67
Target Start/End: Complemental strand, 36499583 - 36499550
Alignment:
Q  34 ggtgcaggatccgaagcggtggctgctacaagaa 67  Q
    ||||||||||||||||||||||||||||||||||    
T  36499583 ggtgcaggatccgaagcggtggctgctacaagaa 36499550  T

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Target: scaffold0221 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 25202 - 25160
Alignment:
Q  246 tcgacgtggttctctcaagcgccctagtatactctacttgttc 288  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  25202 tcgacatggttctctcaagcgccctagtatactctacttgttc 25160  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 139
Target Start/End: Original strand, 42451549 - 42451579
Alignment:
Q  109 gactcttttttctttgtcggctgtaaaccaa 139  Q
    |||||||||||||||||||||||||||||||    
T  42451549 gactcttttttctttgtcggctgtaaaccaa 42451579  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 347
Target Start/End: Complemental strand, 11593153 - 11593117
Alignment:
Q  311 gtcagttcaccgggaggatcgccctcccaattcgaag 347  Q
    |||||||||  ||||||||||||||||||||||||||    
T  11593153 gtcagttcattgggaggatcgccctcccaattcgaag 11593117  T

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