View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12525_low_10 (Length: 244)
Name: NF12525_low_10
Description: NF12525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12525_low_10 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 52699912 - 52699684
Alignment:
| Q |
16 |
caaaacacactcatgctgttctctcctgggtagtgttcccgtctcgtcttttcaaccaatgctgctgaagccatagcgatgattgagacaaaaagtccaa |
115 |
Q |
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| T |
52699912 |
caaaacacactcatgctgttctctcctgggtagtgttcccgtctcgtcttttcaaccaatgctgctgaagccatagcgatgattgagacaaaaagtccaa |
52699813 |
T |
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| Q |
116 |
ctcccattcgttgtaaggatgtgatgccgcggctgtggccggtaaattttcggagaattgggattataaatctctcatataagggtataagtatgagact |
215 |
Q |
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| T |
52699812 |
ctcccattcgttgtaaggatgtgatgccgcggctgtggccggtaaattttcggagaattgggattataaatctctcatataagggtataagtatgagact |
52699713 |
T |
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| Q |
216 |
gctgctggcagcaaacacggtaacagatc |
244 |
Q |
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| T |
52699712 |
gctgctggcagcaaacacggtaacagatc |
52699684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 43 - 230
Target Start/End: Complemental strand, 52723184 - 52722997
Alignment:
| Q |
43 |
gggtagtgttcccgtctcgtcttttcaaccaatgctgctgaagccatagcgatgattgagacaaaaagtccaactcccattcgttgtaaggatgtgatgc |
142 |
Q |
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| T |
52723184 |
gggtagtgatcgcgtctccttttttcaactaatgcagctgaagccatagcgatgattgagataaaaagcccaacacccattcgttgtaacgatgtgatgc |
52723085 |
T |
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| Q |
143 |
cgcggctgtggccggtaaattttcggagaattgggattataaatctctcatataagggtataagtatgagactgctgctggcagcaaa |
230 |
Q |
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| T |
52723084 |
cacggtgatggcctgtaaatttgcggagaaatgggattattaatctctcgtagagaggtacaagtatgaggccgttgatggcagcaaa |
52722997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 55 - 212
Target Start/End: Complemental strand, 52714150 - 52713993
Alignment:
| Q |
55 |
cgtctcgtcttttcaaccaatgctgctgaagccatagcgatgattgagacaaaaagtccaactcccattcgttgtaaggatgtgatgccgcggctgtggc |
154 |
Q |
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| T |
52714150 |
cgtctccttttttcaactaatgcagctgaagccatagcgatgattgagatgaaaagcccaacacccattcgttgtaacgatgtgatgccacggtggtggc |
52714051 |
T |
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| Q |
155 |
cggtaaattttcggagaattgggattataaatctctcatataagggtataagtatgag |
212 |
Q |
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| T |
52714050 |
cggtaaacttacggagaaatgggattatgaatctctcgtagaaaggtacaagtatgag |
52713993 |
T |
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