View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12525_low_5 (Length: 304)
Name: NF12525_low_5
Description: NF12525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12525_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 299
Target Start/End: Complemental strand, 4244242 - 4243959
Alignment:
| Q |
16 |
aagagattgataatttcgtagcttcaagtaaagtaattgcctcggcttctagaacagataaagatgagtgaatgatggcagatttacccaagaagagttc |
115 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4244242 |
aagagattgataatttcatagcttcaagtaaaacgattgcctcggcttctagaacagataaagatgagtgaatgatggcagatttacccaagaggagttc |
4244143 |
T |
|
| Q |
116 |
accttcagagtttcgacaacaaatgccataacctgctgcagcgttgttttgaaaaattgcagcatccatgttacatttaatcatgccgccagttggttta |
215 |
Q |
| |
|
| ||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4244142 |
atcttcagagtttcggcaacagatgccataacctgctgcaacgttgttttgaaaaattgcggcatccatgttacatttaatcatgccgccagttggttta |
4244043 |
T |
|
| Q |
216 |
acccaagagatatggtgattcgggttgattggttgagtttttgcactttgcatgcaactccattcatgaagagtgtcctttgct |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4244042 |
acccaagagatatggtgattcgggttgattggttgagtttttgcactttgcatgcaactccattcatgaagagtgtcctttgct |
4243959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 18 - 299
Target Start/End: Original strand, 33495334 - 33495617
Alignment:
| Q |
18 |
gagattgataatttcgtagcttcaagtaaagtaattg--cctcggcttctagaacagataaagatgagtgaatgatggcagatttacccaagaagagttc |
115 |
Q |
| |
|
||||||||||||||| || | |||||||||| ||||| ||||||||||||||| |||||||||||| |||||||||| ||||||||||| | |||||| |
|
|
| T |
33495334 |
gagattgataatttcataacgtcaagtaaagcaattgtgcctcggcttctagaagagataaagatgaatgaatgatggaagatttacccataaggagttc |
33495433 |
T |
|
| Q |
116 |
accttcagagtttcgacaacaaatgccataacctgctgcagcgttgttttgaaaaattgcagcatccatgttacatttaatcatgccgccagttggttta |
215 |
Q |
| |
|
||| |||||||||| |||| |||||||| |||||| ||||||||||||||| | |||||| ||||||||||||| |||| ||| |||||| |
|
|
| T |
33495434 |
gcctcaagagtttcgataacatatgccatatcctgctattttgttgttttgaaaaatcgtggcatccgcgttacatttaatcgtgcccccacgaggttta |
33495533 |
T |
|
| Q |
216 |
acccaagagatatggtgattcgggttgattggttgagtttttgcactttgcatgcaactccattcatgaagagtgtcctttgct |
299 |
Q |
| |
|
|||||||||||||| |||| |||||| | ||| | ||||||||| |||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
33495534 |
acccaagagatatgatgatccgggtttagtggctaagtttttgctctttgcatgcaattccattcatgaagagtgtcatttgct |
33495617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University