View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12525_low_6 (Length: 288)

Name: NF12525_low_6
Description: NF12525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12525_low_6
NF12525_low_6
[»] chr4 (7 HSPs)
chr4 (19-254)||(9594645-9594880)
chr4 (10-246)||(9582840-9583076)
chr4 (10-246)||(9588535-9588771)
chr4 (1-207)||(9603430-9603636)
chr4 (24-182)||(9573376-9573536)
chr4 (24-157)||(9568256-9568389)
chr4 (21-117)||(54295949-54296045)
[»] chr6 (12 HSPs)
chr6 (10-131)||(32973513-32973634)
chr6 (15-127)||(32745744-32745856)
chr6 (15-118)||(29123217-29123320)
chr6 (15-131)||(34279400-34279518)
chr6 (15-96)||(29149753-29149834)
chr6 (19-95)||(21379332-21379408)
chr6 (20-116)||(23216862-23216958)
chr6 (21-116)||(29130392-29130487)
chr6 (15-131)||(29152965-29153081)
chr6 (19-75)||(34259145-34259201)
chr6 (19-69)||(29136416-29136466)
chr6 (21-69)||(29299189-29299237)
[»] chr7 (1 HSPs)
chr7 (10-94)||(42445421-42445505)
[»] scaffold0134 (1 HSPs)
scaffold0134 (20-113)||(17144-17237)
[»] chr5 (4 HSPs)
chr5 (27-118)||(42782257-42782348)
chr5 (27-118)||(41226999-41227090)
chr5 (10-79)||(42777123-42777192)
chr5 (15-103)||(40548369-40548457)
[»] scaffold0054 (2 HSPs)
scaffold0054 (10-115)||(34343-34448)
scaffold0054 (10-115)||(40700-40805)


Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 9594645 - 9594880
Alignment:
Q  19 ataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaataggtaatttagataaaatggagaaggaaatatcgtcagctatataggt 118  Q
    ||||||||||||||| ||| | ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  9594645 ataagagagaccatgctttgcgaacacattcaaatcgcttaaaagatttaataggtaatttagatagaatggagaaggaaatatcatcagctatataggt 9594744  T
Q  119 ggtgctcacctttctcttttttgcggccactgactccatgagcggttgtaaattggaatgcaatgagatattgaaagcgcaaagtgattgggatcagtaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9594745 ggtgctcacctttctcttttttgcggccactgactccatgagcggttgtaaattggaatgcaatgagatattgaaagcgcaaagtgattgggatcagtaa 9594844  T
Q  219 aaagtagaaaccctaaacaaatttggagtcctaacg 254  Q
    ||||||||||||||||||||||||||||||||||||    
T  9594845 aaagtagaaaccctaaacaaatttggagtcctaacg 9594880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 10 - 246
Target Start/End: Original strand, 9582840 - 9583076
Alignment:
Q  10 ggttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaataggtaatttagataaaatggagaaggaaatatcgtcagc 109  Q
    |||| ||||||||||||||||||| ||| | || ||||||||| || ||||  ||||||| ||| ||||| |||||||| ||||||| ||| || ||||     
T  9582840 ggttttcagataagagagaccatgctttgcgaatgcattcaaaccgtttaatggatttaaaaggcaatttggataaaatagagaaggcaatttcatcagg 9582939  T
Q  110 tatataggtggtgctcacctttctcttttttgcggccactgactccatgagcggttgtaaattggaatgcaatgagatattgaaagcgcaaagtgattgg 209  Q
    |||||||||||||||||||||||| ||||| || || |||||||||||  ||||||| ||||||||||||| ||||||  ||||||| ||||||||||||    
T  9582940 tatataggtggtgctcacctttctttttttagcagcgactgactccatcggcggttgcaaattggaatgcagtgagatcctgaaagcacaaagtgattgg 9583039  T
Q  210 gatcagtaaaaagtagaaaccctaaacaaatttggag 246  Q
    ||| | || |||| |||||||||||||||||||||||    
T  9583040 gattactagaaagcagaaaccctaaacaaatttggag 9583076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 10 - 246
Target Start/End: Original strand, 9588535 - 9588771
Alignment:
Q  10 ggttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaataggtaatttagataaaatggagaaggaaatatcgtcagc 109  Q
    |||| ||||||||||||||||||| ||| | || ||||||||| || ||||  ||||||| ||| ||||| |||||||| ||||||| ||| || ||||     
T  9588535 ggttttcagataagagagaccatgctttgcgaatgcattcaaaccgtttaatggatttaaaaggcaatttggataaaatagagaaggcaatttcatcagg 9588634  T
Q  110 tatataggtggtgctcacctttctcttttttgcggccactgactccatgagcggttgtaaattggaatgcaatgagatattgaaagcgcaaagtgattgg 209  Q
    |||||||||||||||||||||||| ||||| || || |||||||||||  ||||||| ||||||||||||| ||||||  ||||||| ||||||||||||    
T  9588635 tatataggtggtgctcacctttctttttttagcagcgactgactccatcggcggttgcaaattggaatgcagtgagatcctgaaagcacaaagtgattgg 9588734  T
Q  210 gatcagtaaaaagtagaaaccctaaacaaatttggag 246  Q
    ||| | || |||| |||||||||||||||||||||||    
T  9588735 gattactagaaagcagaaaccctaaacaaatttggag 9588771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 9603430 - 9603636
Alignment:
Q  1 taaaactacggttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaataggtaatttagataaaatggagaaggaaat 100  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||| |||| ||||||||||| |||    
T  9603430 taaaactacggttctcagataagagagaccatggtttacaaaagcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaat 9603529  T
Q  101 atcgtcagctatataggtggtgctcacctttctcttttttgcggccactgactccatgagcggttgtaaattggaatgcaatgagatattgaaagcgcaa 200  Q
    ||| |||| |||||||||||||||  |||||   || ||| | ||||| ||||||||    ||||| |||| ||||||||||||||| ||||||||||||    
T  9603530 atcatcaggtatataggtggtgctacccttttcgttctttacagccaccgactccattgcaggttgcaaatcggaatgcaatgagatcttgaaagcgcaa 9603629  T
Q  201 agtgatt 207  Q
    |||||||    
T  9603630 agtgatt 9603636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 24 - 182
Target Start/End: Complemental strand, 9573536 - 9573376
Alignment:
Q  24 agagaccatggtttacaaacgcattcaaatcgcttaaaagatttaataggtaatttagataaaatggagaagg-aaatatcgtcagctatataggtggtg 122  Q
    |||||||||| ||| | ||| ||||||||||||||||||||||||||||| ||||| |||| ||||||||||| ||||||| |||| |||||||||||||    
T  9573536 agagaccatgatttgcgaacacattcaaatcgcttaaaagatttaataggcaatttggatagaatggagaaggcaaatatcatcaggtatataggtggtg 9573437  T
Q  123 ctcacctttctcttttttgc-ggccactgactccatgagcggttgtaaattggaatgcaat 182  Q
    ||||||||||| |||| |||  ||||||||||||||  ||||||| |||||| ||||||||    
T  9573436 ctcacctttcttttttctgcaagccactgactccattggcggttgcaaattgtaatgcaat 9573376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 24 - 157
Target Start/End: Complemental strand, 9568389 - 9568256
Alignment:
Q  24 agagaccatggtttacaaacgcattcaaatcgcttaaaagatttaataggtaatttagataaaatggagaaggaaatatcgtcagctatataggtggtgc 123  Q
    |||||||||| ||||| |||||||||||||||||||| |||||||| ||| ||||| |||| ||| ||||||| |||||| |||| |||| |||| ||||    
T  9568389 agagaccatgatttacgaacgcattcaaatcgcttaatagatttaaaaggcaatttggatagaatagagaaggcaatatcatcagatatacaggttgtgc 9568290  T
Q  124 tcacctttctcttttttgcggccactgactccat 157  Q
    |||||||||| |||||||| || |||||||||||    
T  9568289 tcacctttcttttttttgcagcgactgactccat 9568256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 54295949 - 54296045
Alignment:
Q  21 aagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaataggtaatttagataaaatggagaaggaaatatcgtcagctatatagg 117  Q
    ||||||||||||| | ||| ||||||||||||||| ||||||||||||| ||| | ||| ||||||||||||||||||||||| |||| ||||||||    
T  54295949 aagagagaccatgatctacgaacgcattcaaatcgtttaaaagatttaagaggcagttttgataaaatggagaaggaaatatcatcaggtatatagg 54296045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 131
Target Start/End: Original strand, 32973513 - 32973634
Alignment:
Q  10 ggttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaataggtaatttagataaaatggagaaggaaatatcgtcagc 109  Q
    |||| ||||||||||||||||||| ||||||||| |||||||| ||||| |||||||||| ||| ||||| |||| |||  |||||||||| || ||||     
T  32973513 ggttttcagataagagagaccatgatttacaaacacattcaaaacgcttgaaagatttaagaggcaattttgatagaatatagaaggaaatttcatcaga 32973612  T
Q  110 tatataggtggtgctcaccttt 131  Q
     ||||| |||||||||||||||    
T  32973613 aatatatgtggtgctcaccttt 32973634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 15 - 127
Target Start/End: Original strand, 32745744 - 32745856
Alignment:
Q  15 tcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaataggtaatttagataaaatggagaaggaaatatcgtcagctatat 114  Q
    ||||||||||||||||||| ||| | ||||||||||||||| ||||||||||||| ||||| ||| ||||  |||||||||| |||||| |||| |||||    
T  32745744 tcagataagagagaccatgatttgcgaacgcattcaaatcgtttaaaagatttaagaggtagttttgataggatggagaaggcaatatcatcaggtatat 32745843  T
Q  115 aggtggtgctcac 127  Q
    || |||| |||||    
T  32745844 agttggtactcac 32745856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 118
Target Start/End: Complemental strand, 29123320 - 29123217
Alignment:
Q  15 tcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaataggtaatttagataaaatggagaaggaaatatcgtcagctatat 114  Q
    ||||| ||||||||||||| ||| | |||| |||||| ||| ||||||||||||| ||| ||||| |||| ||||||||||| |||||| |||| |||||    
T  29123320 tcagacaagagagaccatgatttgcgaacggattcaactcgtttaaaagatttaagaggcaattttgatagaatggagaaggcaatatcatcagatatat 29123221  T
Q  115 aggt 118  Q
    ||||    
T  29123220 aggt 29123217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 131
Target Start/End: Original strand, 34279400 - 34279518
Alignment:
Q  15 tcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaataggtaatttagataaaatggagaaggaaatatcgtcag--ctat 112  Q
    |||||||| ||| |||||| ||||||||| |||||||| | ||| |||||||||| ||||||||| || | ||||||||||| |||||| ||||   |||    
T  34279400 tcagataaaagataccatgatttacaaacacattcaaaactcttgaaagatttaagaggtaattttgaaagaatggagaaggcaatatcatcagatatat 34279499  T
Q  113 ataggtggtgctcaccttt 131  Q
    ||| |||||||||||||||    
T  34279500 atatgtggtgctcaccttt 34279518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 29149753 - 29149834
Alignment:
Q  15 tcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaataggtaatttagataaaatggagaagg 96  Q
    ||||| ||||||||||||| ||| | ||||||||||||||  ||||||||||||| ||| ||||| || | |||||||||||    
T  29149753 tcagacaagagagaccatgatttgcgaacgcattcaaatcagttaaaagatttaagaggcaattttgagagaatggagaagg 29149834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 21379332 - 21379408
Alignment:
Q  19 ataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaataggtaatttagataaaatggagaag 95  Q
    ||||||||||||||| |||||  |||||| |||||||||| |||||||||| |||||| || |||| ||| ||||||    
T  21379332 ataagagagaccatgatttacggacgcatccaaatcgcttcaaagatttaagaggtaacttcgatagaatagagaag 21379408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 23216862 - 23216958
Alignment:
Q  20 taagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaataggtaatttagataaaatggagaaggaaatatcgtcagctatatag 116  Q
    |||||||||||||| ||| | ||| |||||||||| ||| |||||||||| |||||| || |||| |||||| |||   |||||||||| |||||||    
T  23216862 taagagagaccatgatttgcgaacacattcaaatctcttcaaagatttaagaggtaacttcgatagaatggataagcttatatcgtcaggtatatag 23216958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 116
Target Start/End: Complemental strand, 29130487 - 29130392
Alignment:
Q  21 aagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaataggtaatttagataaaatggagaaggaaatatcgtcagctatatag 116  Q
    ||||||||||||| ||||| |||| ||||||||||||| |||||||||| ||| || || || | ||||||||||  |||||| | || |||||||    
T  29130487 aagagagaccatgatttacgaacggattcaaatcgcttgaaagatttaagaggcaactttgagagaatggagaagtgaatatcatgaggtatatag 29130392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 131
Target Start/End: Original strand, 29152965 - 29153081
Alignment:
Q  15 tcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaataggtaatttagataaaatggagaaggaaatatcgtcagctatat 114  Q
    ||||||| ||| ||||||| ||| | ||| ||||||||  |||| |||||||||| ||| ||||| || | ||||||||||| |||||| |||| ||| |    
T  29152965 tcagataggagggaccatgatttgcgaacacattcaaaatgcttgaaagatttaagaggcaattttgagagaatggagaaggcaatatcatcagatatgt 29153064  T
Q  115 aggtggtgctcaccttt 131  Q
    | |  ||||||||||||    
T  29153065 atgctgtgctcaccttt 29153081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 34259145 - 34259201
Alignment:
Q  19 ataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaataggta 75  Q
    ||||||||||||||| ||||| ||||||| |||||||||| ||||| |||| |||||    
T  34259145 ataagagagaccatgatttacgaacgcatccaaatcgctttaaagacttaagaggta 34259201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 29136466 - 29136416
Alignment:
Q  19 ataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaa 69  Q
    ||||||||||||||| ||| |||||||||||||  ||||| ||||||||||    
T  29136466 ataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaa 29136416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 29299237 - 29299189
Alignment:
Q  21 aagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaa 69  Q
    ||||||||||||| ||| | ||| |||||||| ||||||||||||||||    
T  29299237 aagagagaccatgatttgcgaacacattcaaaacgcttaaaagatttaa 29299189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 42445505 - 42445421
Alignment:
Q  10 ggttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaataggtaatttagataaaatggagaa 94  Q
    |||| |||||||||||||||||   ||||| ||| ||||||||||||||||||||||||| ||||||||| |||| |||||||||    
T  42445505 ggttttcagataagagagaccacaatttacgaacacattcaaatcgcttaaaagatttaagaggtaattttgatataatggagaa 42445421  T

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Target: scaffold0134 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 17144 - 17237
Alignment:
Q  20 taagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaataggtaatttagataaaatggagaaggaaatatcgtcagctata 113  Q
    |||||||||||||| ||| |||||||||||||||| ||| |||||||||| ||| || || |||| |||||| |||  ||||||||||| ||||    
T  17144 taagagagaccatgatttgcaaacgcattcaaatctcttcaaagatttaagaggcaactttgatagaatggataagctaatatcgtcaggtata 17237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 42782348 - 42782257
Alignment:
Q  27 gaccatggtttacaaacgcattcaaatcgcttaaaagatttaataggtaatttagataaaatggagaaggaaatatcgtcagctatataggt 118  Q
    ||||||| |||||  |||||| |||||||||| ||||||||||| |||||||| |||| ||| ||||||| |||||| |||  |||||||||    
T  42782348 gaccatgatttacgtacgcatccaaatcgcttcaaagatttaatcggtaattttgatagaattgagaaggtaatatcatcatgtatataggt 42782257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 41227090 - 41226999
Alignment:
Q  27 gaccatggtttacaaacgcattcaaatcgcttaaaagatttaataggtaatttagataaaatggagaaggaaatatcgtcagctatataggt 118  Q
    ||||||| |||||| | ||||  ||||||||| ||||||||||| |||||||| |||| ||| ||||||| |||||| |||  |||||||||    
T  41227090 gaccatgatttacatatgcatcgaaatcgctttaaagatttaatcggtaattttgatagaattgagaaggtaatatcatcatgtatataggt 41226999  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 42777192 - 42777123
Alignment:
Q  10 ggttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaataggtaattt 79  Q
    |||||||| ||||||||||||||| ||| || || ||||||||||| ||    |||||||||||||||||    
T  42777192 ggttatcaaataagagagaccatgatttgcacacacattcaaatcgtttggttgatttaataggtaattt 42777123  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 40548457 - 40548369
Alignment:
Q  15 tcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaataggtaatttagataaaatggagaaggaaatatc 103  Q
    ||||||| | ||||||||| |||||  | ||||||||||||||| |||||||||| ||| | |||  ||| |||||| |||| ||||||    
T  40548457 tcagataggtgagaccatgatttacttatgcattcaaatcgcttcaaagatttaacaggaagtttttatagaatggaaaaggcaatatc 40548369  T

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Target: scaffold0054 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 115
Target Start/End: Original strand, 34343 - 34448
Alignment:
Q  10 ggttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaataggtaatttagataaaatggagaaggaaatatcgtcagc 109  Q
    |||| ||| ||||||| ||||||| ||||| |||||||  |||||| || |||||||||| ||| | ||| |||| ||| | ||||||||||||||| |     
T  34343 ggttttcaaataagagtgaccatgatttacgaacgcatcgaaatcggttcaaagatttaagagggagtttggatagaattgtgaaggaaatatcgtctga 34442  T
Q  110 tatata 115  Q
    ||||||    
T  34443 tatata 34448  T

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Target: scaffold0054; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 115
Target Start/End: Original strand, 40700 - 40805
Alignment:
Q  10 ggttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaataggtaatttagataaaatggagaaggaaatatcgtcagc 109  Q
    |||| ||| ||||||| ||||||| ||||| |||||||  |||||| || ||||||| || ||| | ||| |||| ||| | ||||||||||||||| ||    
T  40700 ggttttcaaataagagtgaccatgatttacgaacgcatcgaaatcggttcaaagattgaagagggagtttggatagaatcgtgaaggaaatatcgtctgc 40799  T
Q  110 tatata 115  Q
    ||||||    
T  40800 tatata 40805  T

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