View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12526_low_1 (Length: 482)
Name: NF12526_low_1
Description: NF12526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12526_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 34 - 459
Target Start/End: Original strand, 53739587 - 53740012
Alignment:
| Q |
34 |
tagtagataccagtaagtgaaaatcatatctcacatcttaaatatctgtgagacaatccctttgttggacctttgattaatatccctttgttggactatt |
133 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53739587 |
tagtacataccagtaagtgaaaatcatatctcacatcttaaatatctgtgagacaatccctttgttggacctttgattaatatccctttgttggactatt |
53739686 |
T |
|
| Q |
134 |
gttaatcaccaccattggtccatgatatcatgtccattttgattttgttttcttttcctggagttcataagctacacatgcatggtctgataatcaagca |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53739687 |
gttaatcaccaccattggtccatgatatcatgttcattttgattttgttttcttttcctggagttcataagctacacatgcatggtctgataatcaagtt |
53739786 |
T |
|
| Q |
234 |
gttatgatatttacagaagagatagtgtcattggagcaaagttattttcttacgccactgtcgcatgataattatcatttatcaatcaatataatcgagg |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53739787 |
gttatgatatttacagaagagatagtgtcattggaccaaagttattttcttacgccaccttcacatgataattatcatttatcaatcaatataatcgagg |
53739886 |
T |
|
| Q |
334 |
acagtaataaactctataaatatcaaaatgatggcgacaaatatcttgtctttcatgctttacctgaagctgaatcttgatggtatatgttccgttacag |
433 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53739887 |
acaataatgaactctataaatatcaaaatgatggcgacaaatatcttgtctttcatgctttacctgaagctgaatcttgatggtatatgttccgttacag |
53739986 |
T |
|
| Q |
434 |
ttcaataattatttctcacggggaat |
459 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
53739987 |
ttcaataattatttctcacggggaat |
53740012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University