View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12526_low_3 (Length: 319)
Name: NF12526_low_3
Description: NF12526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12526_low_3 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 16 - 319
Target Start/End: Original strand, 23694608 - 23694911
Alignment:
| Q |
16 |
ctttctgtgaagattgtgttggaagatatctagctgcaaaaattcaagagagtatatcagtggtaaaatgtcctgatccaaaatgcaatgatattttgga |
115 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
23694608 |
ctttctgtgaagattgtcttggaagatatctagctgcaaaaattcaagagagtatatcaatggtaaaatgtcctgatccaaaatgcaatgatattttgga |
23694707 |
T |
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| Q |
116 |
gcctcatgattgtagttcaattttagcaaaggatgtgtttgatagatgggaaaatgcactttgtgagaatatggtgttaggtccacaggaattttattgt |
215 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
23694708 |
gcctcatgattgtagttcaattttaccaaaggatgtgtttgatagatgggaaaatgcactttgtgagaatatggtgttaggttcacagaaattttattgt |
23694807 |
T |
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| Q |
216 |
ccttttaatgattgttcagctacgttgttgaatgatgaaaagggaattgggactgcttcggaatgtcctctttgtcatagattgttctgtgcaaaatgta |
315 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||| |||||| |
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| T |
23694808 |
ccttttaatgattgttcagctatgttgttgaatgatgaaaagggaattgtgactgcttcggaatgtccacattgtcatagattgttctgtgcacaatgta |
23694907 |
T |
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| Q |
316 |
aggt |
319 |
Q |
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|||| |
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| T |
23694908 |
aggt |
23694911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 16 - 319
Target Start/End: Complemental strand, 23701195 - 23700890
Alignment:
| Q |
16 |
ctttctgtgaagattgtgttggaagatatctagctgcaaaaattca--agagagtatatcagtggtaaaatgtcctgatccaaaatgcaatgatattttg |
113 |
Q |
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| T |
23701195 |
ctttctgtgaatattgtgttggaagatatctagctgcaaaaattcacaagagagtatatcaatggtaaaatgtcctgatccaaaatgcaatgatattttg |
23701096 |
T |
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| Q |
114 |
gagcctcatgattgtagttcaattttagcaaaggatgtgtttgatagatgggaaaatgcactttgtgagaatatggtgttaggtccacaggaattttatt |
213 |
Q |
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| T |
23701095 |
gagcctcatgattgttgttcaattttaccaaaggatgtgtttgatagatgggaaaattcactttgtgagaatatggtgttaggttcacagaaattttatt |
23700996 |
T |
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| Q |
214 |
gtccttttaatgattgttcagctacgttgttgaatgatgaaaagggaattgggactgcttcggaatgtcctctttgtcatagattgttctgtgcaaaatg |
313 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||| |||| |
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| T |
23700995 |
gtccttttaatgattgttcagctatgttgttgaatgatgaaaagggaattgtgactgcttcggaatgtccacattgtcatagattgttctgtgcacaatg |
23700896 |
T |
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| Q |
314 |
taaggt |
319 |
Q |
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|||||| |
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| T |
23700895 |
taaggt |
23700890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 16 - 319
Target Start/End: Original strand, 23696739 - 23697042
Alignment:
| Q |
16 |
ctttctgtgaagattgtgttggaagatatctagctgcaaaaattcaagagagtatatcagtggtaaaatgtcctgatccaaaatgcaatgatattttgga |
115 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||||||||||| |||| || |||||||||||||| ||||||| ||||||| ||| ||||| |
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| T |
23696739 |
ctttctgtgaaggatgtgttggaagttatctagctgcaaaaattcaagagaatatagcaatggtaaaatgtccttatccaaattgcaatggtatattgga |
23696838 |
T |
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| Q |
116 |
gcctcatgattgtagttcaattttagcaaaggatgtgtttgatagatgggaaaatgcactttgtgagaatatggtgttaggtccacaggaattttattgt |
215 |
Q |
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||||||| ||||||| | || || |||||||||||||||| ||||||| ||| ||||||||||||||||||||||||| | |||| |||| || ||| |
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| T |
23696839 |
gcctcataattgtagcacccttataccaaaggatgtgtttgagagatggggaaaggcactttgtgagaatatggtgttagattcacaaaaattgtactgt |
23696938 |
T |
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| Q |
216 |
ccttttaatgattgttcagctacgttgttgaatgatgaaaagggaattgggactgcttcggaatgtcctctttgtcatagattgttctgtgcaaaatgta |
315 |
Q |
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|||||||||||||||||||||| |||| ||||||||||| ||| | ||| || | ||| || ||||||| |||| ||||||| || |||||| |||||| |
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| T |
23696939 |
ccttttaatgattgttcagctatgttggtgaatgatgaagaggaagttgtaaccgtttctgagtgtcctcattgtaatagattattttgtgcacaatgta |
23697038 |
T |
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| Q |
316 |
aggt |
319 |
Q |
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|||| |
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| T |
23697039 |
aggt |
23697042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 16 - 252
Target Start/End: Complemental strand, 8149333 - 8149100
Alignment:
| Q |
16 |
ctttctgtgaagattgtgttggaagatatctagctgcaaaaattcaagagagtatatcagtggtaaaatgtcctgatccaaaatgcaatgatattttgga |
115 |
Q |
| |
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||||||||||||||||||||| ||||| |||||||| ||||||||||||| | | || ||||||||||||||||||| |||||| || ||| || |
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| T |
8149333 |
ctttctgtgaagattgtgttgcaagatttctagctgtgaaaattcaagagaaaaaagcaacaataaaatgtcctgatccaaattgcaatagtaattttga |
8149234 |
T |
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| Q |
116 |
gcctcatgattgtagttcaattttagcaaaggatgtgtttgatagatgggaaaatgcactttgtgagaatatggtgttaggtccacaggaattttattgt |
215 |
Q |
| |
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|||| | |||| ||||||| || ||||||||||||| || ||||||| | ||||||| || || | |||| || || || || |||||||| |
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| T |
8149233 |
cactcaacaatgtatttcaattataccaaaggatgtgttcgaaagatggggagatgcactagttg---attcgatgttcggatcaaagaaaatttattgt |
8149137 |
T |
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| Q |
216 |
ccttttaatgattgttcagctacgttgttgaatgatg |
252 |
Q |
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|||||||| ||||||||||||| |||| ||||||||| |
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| T |
8149136 |
ccttttaaggattgttcagctatgttggtgaatgatg |
8149100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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