View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12526_low_4 (Length: 257)
Name: NF12526_low_4
Description: NF12526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12526_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 17 - 244
Target Start/End: Complemental strand, 39454956 - 39454729
Alignment:
| Q |
17 |
atcatggctgtgcaggacatgtcaacaacgaaagctgcgaggactccacttgcttcaccagtaatgaggttagatacggcttgtttgacgtttggtttct |
116 |
Q |
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| T |
39454956 |
atcatggctgtgcaggacatgtcaacaacgaaagctgcgaggactccacttgcttcaccagtaatgaggttagatacggcttgtttgacgtttggtttct |
39454857 |
T |
|
| Q |
117 |
gagcttcaaggtgagcggacatggaggaaactggattagtgtttgggggaagagagcattctggaaggttgatgatgcggagtgaatcggagattggaag |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39454856 |
gagcttcaaggtgagcggacatggaggaaactggattagtgtttgggggaagagagcattctggaaggttgatgatgcggattgaatcggagattggaag |
39454757 |
T |
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| Q |
217 |
agatttagtgtatacatcggtttcagtg |
244 |
Q |
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||||||| |||||||||| ||||||||| |
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| T |
39454756 |
agatttactgtatacatcagtttcagtg |
39454729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 25 - 245
Target Start/End: Complemental strand, 39472345 - 39472125
Alignment:
| Q |
25 |
tgtgcaggacatgtcaacaacgaaagctgcgaggactccacttgcttcaccagtaatgaggttagatacggcttgtttgacgtttggtttctgagcttca |
124 |
Q |
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||||||| ||||||||||||| ||||| || ||||||||| || || | ||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39472345 |
tgtgcagaacatgtcaacaacaaaagcggcaaggactccattttctgatctggtaatgaggttagatactacttgtttgacgtttggtttctgagcttcg |
39472246 |
T |
|
| Q |
125 |
aggtgagcggacatggaggaaactggattagtgtttgggggaagagagcattctggaaggttgatgatgcggagtgaatcggagattggaagagatttag |
224 |
Q |
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| T |
39472245 |
aggagcgcagtcatagagggaccttgatctgtgtttggggcaagagaacattctggaaggttgatgatgtggagtgaatcggagataggaagggatttag |
39472146 |
T |
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| Q |
225 |
tgtatacatcggtttcagtga |
245 |
Q |
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|||| ||||||||||| |||| |
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| T |
39472145 |
tgtagacatcggtttctgtga |
39472125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 227
Target Start/End: Complemental strand, 39451323 - 39451107
Alignment:
| Q |
17 |
atcatggctgtgcaggacatgtcaacaacgaaagctgcgaggactccacttgcttcacc---agtaatgaggttagatacggcttgtttgacgtttggtt |
113 |
Q |
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||||||| |||||| ||||||||||||||| | |||||||||||| || || | || |||| |||||||||| |||||||||||||| ||||||| |
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| T |
39451323 |
atcatggtggtgcagaacatgtcaacaacgatggtggcgaggactccattttctcctcctccagtagtgaggttagaaacggcttgtttgacatttggtt |
39451224 |
T |
|
| Q |
114 |
tctgagcttcaaggtgagcggacatgga---ggaaactggattagtgtttgggggaagagagcattctggaaggttgatgatgcggagtgaatcggagat |
210 |
Q |
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| T |
39451223 |
tctgagcttcgaggagagcaggcatggaagcgaaacctggattggtgtttggaggaagagaaacttctggaaggttgatgatgttgagagaatctgagat |
39451124 |
T |
|
| Q |
211 |
tggaagagatttagtgt |
227 |
Q |
| |
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||||| |||||||||| |
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| T |
39451123 |
aggaagggatttagtgt |
39451107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 76 - 235
Target Start/End: Complemental strand, 39486723 - 39486564
Alignment:
| Q |
76 |
agtaatgaggttagatacggcttgtttgacgtttggtttctgagcttcaaggtgagcggacatggaggaaac-tggattagtgtttgggggaagagagca |
174 |
Q |
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|||| ||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||| || |||| ||| | ||||||||||||||||| || |
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| T |
39486723 |
agtagtgaggttggatacagcttgtttgacgtttggtttctgagcttcaaggagagcgttcat-gacaaaacgtggttcggtgtttgggggaagagaaca |
39486625 |
T |
|
| Q |
175 |
ttctggaaggttgatgatgcggagtgaatcggagattggaagagatttagtgtatacatcg |
235 |
Q |
| |
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||||||||||||||||| |||| |||||||| || ||||| ||||| ||||| |||||| |
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| T |
39486624 |
ttctggaaggttgatgacctggagagaatcggaaatgggaagggattttgtgtagacatcg |
39486564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 227
Target Start/End: Complemental strand, 39475829 - 39475613
Alignment:
| Q |
17 |
atcatggctgtgcaggacatgtcaacaacgaaagctgcgaggactccac-ttg--cttcaccagtaatgaggttagatacggcttgtttgacgtttggtt |
113 |
Q |
| |
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||||||| |||||| |||||||||||||||| || |||||| |||| ||| |||| | |||| ||||||| || || |||||||| |||||||||| |
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| T |
39475829 |
atcatggtggtgcagaacatgtcaacaacgaaggcggcgaggtgtccatgttgtccttctctagtagtgaggttggagacagcttgttttacgtttggtt |
39475730 |
T |
|
| Q |
114 |
tctgagcttcaaggtgagcggacatggaggaaa---ctggattagtgtttgggggaagagagcattctggaaggttgatgatgcggagtgaatcggagat |
210 |
Q |
| |
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|||||||||| ||| |||| | |||||| || | |||||| ||||||||||||||||| ||||||||||||||||||| ||| || || ||||| |
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| T |
39475729 |
tctgagcttcgaggagagctgtcatggaagagaaacctggatcggtgtttgggggaagagaaacttctggaaggttgatgatgttgagagattctgagat |
39475630 |
T |
|
| Q |
211 |
tggaagagatttagtgt |
227 |
Q |
| |
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||||| |||||||||| |
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| T |
39475629 |
aggaagggatttagtgt |
39475613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 82 - 191
Target Start/End: Original strand, 39464451 - 39464560
Alignment:
| Q |
82 |
gaggttagatacggcttgtttgacgtttggtttctgagcttcaaggtgagcggacatggaggaaactggattagtgtttgggggaagagagcattctgga |
181 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||| |||||| ||||| ||| | |||| |||||| || | || |||||||||| ||||||| |
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| T |
39464451 |
gaggttagagacggcttgtttgacgtttggtttgtgagcatcaaggagagcgttcatagcggaacctggatcagaggtttggggaagagaaacttctgga |
39464550 |
T |
|
| Q |
182 |
aggttgatga |
191 |
Q |
| |
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|||||||||| |
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| T |
39464551 |
aggttgatga |
39464560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 236
Target Start/End: Complemental strand, 39460508 - 39460348
Alignment:
| Q |
76 |
agtaatgaggttagatacggcttgtttgacgtttggtttctgagcttcaaggtgagcggacatggaggaaactggattagtgtttgggggaagagagcat |
175 |
Q |
| |
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|||| |||| ||||||||||||||||||||||||| |||||||||||| ||| ||| ||| |||| ||| | |||||||||||||||| | |
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| T |
39460508 |
agtagtgagattagatacggcttgtttgacgtttgatttctgagcttcgaggaaagccatcattctggaagttggttcgatgtttgggggaagagaaact |
39460409 |
T |
|
| Q |
176 |
tctggaaggttgatgatgcggagtgaatcggagattggaagagatttagtgtatacatcgg |
236 |
Q |
| |
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|||||||||||||||||| ||| ||||| || | ||||| |||||||||| ||||||| |
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|
| T |
39460408 |
tctggaaggttgatgatgtcgagagaatcagaagtgggaagtgatttagtgttaacatcgg |
39460348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 122
Target Start/End: Original strand, 39458210 - 39458251
Alignment:
| Q |
81 |
tgaggttagatacggcttgtttgacgtttggtttctgagctt |
122 |
Q |
| |
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||||||| || ||||||| ||||||||||||||||||||||| |
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| T |
39458210 |
tgaggttggagacggcttttttgacgtttggtttctgagctt |
39458251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 234
Target Start/End: Original strand, 39470617 - 39470826
Alignment:
| Q |
25 |
tgtgcaggacatgtcaacaacgaaagctgcgaggactccacttgcttcaccagtaatgaggttagatacggcttgtttgacgtttggtttctgagcttca |
124 |
Q |
| |
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||||||| |||||||||||| || ||| |||||| |||| | ||| |||||| ||||||| || | |||||||||||||||| ||| |||||||| |
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| T |
39470617 |
tgtgcagaacatgtcaacaatgacagcggcgaggggtccatgttgttctccagtagtgaggttggagatagcttgtttgacgtttgctttatgagcttcg |
39470716 |
T |
|
| Q |
125 |
aggtgagcggacatggaggaaactggattagtgtttgggggaagagagcattctggaaggttgatgatgcggagtgaatcggagattggaagagatttag |
224 |
Q |
| |
|
||| ||||| ||| ||| |||||| || | ||||| ||| ||| ||||||||||||||||| |||| ||||| ||||| |||| ||||||| |
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| T |
39470717 |
aggagagcgttcatatccgaacctggatcagaggttgggagaacagaaacttctggaaggttgatgacatggagagaatcagagatgggaatggatttag |
39470816 |
T |
|
| Q |
225 |
tgtatacatc |
234 |
Q |
| |
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||| ||||| |
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|
| T |
39470817 |
cgtagacatc |
39470826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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