View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12527_high_3 (Length: 443)
Name: NF12527_high_3
Description: NF12527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12527_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 18 - 438
Target Start/End: Complemental strand, 45952588 - 45952167
Alignment:
| Q |
18 |
tgattattatcaattactcttctttcagtttttactatttcacatagaatgaatgtttttgtctacaatttatcatgctggtggaatgttatcattggat |
117 |
Q |
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| T |
45952588 |
tgattattatcaattaatcttctttcagtttttactatttcacatagaatgaatgtttttgtctacaatttatcatgctggtggaatgttatcattggat |
45952489 |
T |
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| Q |
118 |
tgcggattcaaacttgaacaagaatgatattttctttggaagagttgtatcccttaatattataaaagtattgtataatgtggatgatttaactcatacg |
217 |
Q |
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| T |
45952488 |
tgcggattcaaacttgtacaagaattatattttctttggaagagttgtatcccttaatattataaaagtattgtataatgtggatgatttaactcatacg |
45952389 |
T |
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| Q |
218 |
ggtgatgctagcttcagcaaaaagaagaataa-ttgtcttcaaacataatgtgagaaatgtgaggagtgagggccatttctacaaagcattggtttccaa |
316 |
Q |
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| T |
45952388 |
ggtggtgctagcttcagcaaaaagaagaataatttgtcttcaaacataatgtgagaaatgtgaggagtgagggccatttctacaaagcattggtttccaa |
45952289 |
T |
|
| Q |
317 |
tcaccattattgactatacatcggttgtcatgtgtgaatgtttgtccatgcaaataacaaaaatgtagagagattgagggtctccttgtcctatatatac |
416 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45952288 |
tcaccgttattgactatacatcggttgtcatgtgtgaatgtttgtccatgcaaataacaaaaatgtagagagattgagggtctccttgtcctatatatac |
45952189 |
T |
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| Q |
417 |
ctctactagtattcatctcact |
438 |
Q |
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|||||||| |||| || ||||| |
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| T |
45952188 |
ctctactactattgatgtcact |
45952167 |
T |
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