View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12527_high_9 (Length: 301)
Name: NF12527_high_9
Description: NF12527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12527_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 291
Target Start/End: Original strand, 5249958 - 5250231
Alignment:
| Q |
18 |
gtaaaaccattgaagagattgaaaaagttcttcaaaggataccaattcatcacagaataatacctgctattaaatcagcacatgcattagggtgtgattt |
117 |
Q |
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| T |
5249958 |
gtaaaaccattgaagagattgaaaaagttcttcaaaggataccaattcatcacagaataatacctgctattaaatcagcacatgcattagggtgtgattt |
5250057 |
T |
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| Q |
118 |
gaggattgttagtgatgctaatacatttttcattgaaacaattttgaagaatttgggaataagtaaatacttcactgagattaacactaatcctggttat |
217 |
Q |
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| T |
5250058 |
gaggattgttagtgatgctaatacatttttcattgaaacaattttgaagaatttgggaataagtgaatacttcactgagattaacactaatcctggttat |
5250157 |
T |
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| Q |
218 |
gttaatcaacaaggaagattaagaattttaccttaccatgatttcaataaggattcacatggttgcattctctg |
291 |
Q |
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| T |
5250158 |
gttaatcaacaaggaagattaagaattttaccttaccatgatttcaataaggattcacatggttgcattctctg |
5250231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 22 - 284
Target Start/End: Complemental strand, 5276578 - 5276316
Alignment:
| Q |
22 |
aaccattgaagagattgaaaaagttcttcaaaggataccaattcatcacagaataatacctgctattaaatcagcacatgcattagggtgtgatttgagg |
121 |
Q |
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| T |
5276578 |
aaccattgaagagattgaaaaggttcttcaaaggattccaattcatcacagaataatacctgcaattaaatcagctcatgctttagggtgtgatttgagg |
5276479 |
T |
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| Q |
122 |
attgttagtgatgctaatacatttttcattgaaacaattttgaagaatttgggaataagtaaatacttcactgagattaacactaatcctggttatgtta |
221 |
Q |
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| T |
5276478 |
attgttagtgatgctaatatgttttacattgaaactattttgaagcatttaggaataagtgaatacttcactgagattaacactaatcctggttatgtta |
5276379 |
T |
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| Q |
222 |
atcaacaaggaagattaagaattttaccttaccatgatttcaataaggattcacatggttgca |
284 |
Q |
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| T |
5276378 |
atcaagaaggaagagttagaatttcaccttaccatgatttcaataaggcttcacatggttgca |
5276316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 22 - 284
Target Start/End: Complemental strand, 5272599 - 5272337
Alignment:
| Q |
22 |
aaccattgaagagattgaaaaagttcttcaaaggataccaattcatcacagaataatacctgctattaaatcagcacatgcattagggtgtgatttgagg |
121 |
Q |
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| T |
5272599 |
aaccattgaagagattgaaaaggttcttcaaaggattccaattcatcacagaataatacctgcaattaaatcagctcatgctttagggtgtgatttgagg |
5272500 |
T |
|
| Q |
122 |
attgttagtgatgctaatacatttttcattgaaacaattttgaagaatttgggaataagtaaatacttcactgagattaacactaatcctggttatgtta |
221 |
Q |
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| T |
5272499 |
attgttagtgatgctaatatgttttacattgaaactattttgaagcatttgggaattagtgaatgcttctcagagattaactctaatcctggttatgtta |
5272400 |
T |
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| Q |
222 |
atcaacaaggaagattaagaattttaccttaccatgatttcaataaggattcacatggttgca |
284 |
Q |
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| T |
5272399 |
atcaagaaggaagagttagaatttcaccttaccatgatttcaataaggcttcacatggttgca |
5272337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 29 - 284
Target Start/End: Original strand, 5269189 - 5269444
Alignment:
| Q |
29 |
gaagagattgaaaaagttcttcaaaggataccaattcatcacagaataatacctgctattaaatcagcacatgcattagggtgtgatttgaggattgtta |
128 |
Q |
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||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||| || |||||||||||||||||||||| |
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| T |
5269189 |
gaagatattgaaaaagttcttcaaaggataccaattaatcacagaataatatctgctattaaatcagcttatgctttggggtgtgatttgaggattgtta |
5269288 |
T |
|
| Q |
129 |
gtgatgctaatacatttttcattgaaacaattttgaagaatttgggaataagtaaatacttcactgagattaacactaatcctggttatgttaatcaaca |
228 |
Q |
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| T |
5269289 |
gcgatgctaatacgattttcattgacacaattttgaagcatttgggaattagtgaatgcttctctgagattaacaccaatcctggttatgttaatcaaga |
5269388 |
T |
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| Q |
229 |
aggaagattaagaattttaccttaccatgatttcaataaggattcacatggttgca |
284 |
Q |
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||||||||||| | || | ||||| ||||| ||||| || | ||| |||||||||| |
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| T |
5269389 |
aggaagattaaaagttatgccttatcatgacttcaacaaagcttctcatggttgca |
5269444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 78 - 284
Target Start/End: Original strand, 14944396 - 14944601
Alignment:
| Q |
78 |
tacctgctattaaatcagcacatgcattagggtgtgatttgag-gattgttagtgatgctaatacatttttcattgaaacaattttgaagaatttgggaa |
176 |
Q |
| |
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||||||| ||||||||||||||||| ||||||||||||||||| ||||| || ||||| ||| |||| ||||||||| ||||||||| ||||||||| |
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| T |
14944396 |
tacctgcaattaaatcagcacatgctttagggtgtgatttgagttattgtgagcgatgccaatgtgttttacattgaaactattttgaagcatttgggaa |
14944495 |
T |
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| Q |
177 |
taagtaaata-cttcactgagattaacactaatcctggttatgttaatcaacaaggaagattaagaattttaccttaccatgatttcaataaggattcac |
275 |
Q |
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| T |
14944496 |
taagtgaatatcttctcagagattaacactaatcttggttatgttaatgaagaaggtagactaagaatgtcaccatacc---acttcaacaaggcttcac |
14944592 |
T |
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| Q |
276 |
atggttgca |
284 |
Q |
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||||||||| |
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| T |
14944593 |
atggttgca |
14944601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 108 - 264
Target Start/End: Complemental strand, 26314884 - 26314728
Alignment:
| Q |
108 |
ggtgtgatttgaggattgttagtgatgctaatacatttttcattgaaacaattttgaagaatttgggaataagtaaatacttcactgagattaacactaa |
207 |
Q |
| |
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||||||||||||||||||| |||||||| || |||||||||||||| |||||| | ||| | || ||||| || ||| ||| | |||||||||||||| |
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| T |
26314884 |
ggtgtgatttgaggattgtaagtgatgcaaacacatttttcattgagacaattctaaagcactttggaattagggaatgtttctcggagattaacactaa |
26314785 |
T |
|
| Q |
208 |
tcctggttatgttaatcaacaaggaagattaagaattttaccttaccatgatttcaa |
264 |
Q |
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||| ||||||||| || || |||||||||| |||||||| |||| | ||||| |||| |
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| T |
26314784 |
tccaggttatgttgatgaagaaggaagattgagaattttgcctttctatgatctcaa |
26314728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 108 - 268
Target Start/End: Complemental strand, 43110420 - 43110263
Alignment:
| Q |
108 |
ggtgtgatttgaggattgttagtgatgctaatacatttttcattgaaacaattttgaagaatttgggaataagtaaatacttcactgagattaacactaa |
207 |
Q |
| |
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||||||||||||||||||| |||||||| || || ||||||||||| |||||| ||||| |||| || || || ||| ||| | |||||||||||||| |
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| T |
43110420 |
ggtgtgatttgaggattgtaagtgatgcaaacacgtttttcattgagacaattctgaagcattttggtattagggaatgtttctcagagattaacactaa |
43110321 |
T |
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| Q |
208 |
tcctggttatgttaatcaacaaggaagattaagaattttaccttaccatgatttcaataag |
268 |
Q |
| |
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||| ||||||||| || ||||||| || |||||||| |||||||||||| |||||||| |
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| T |
43110320 |
tccaggttatgttgat---gaaggaaggttgagaattttgccttaccatgatctcaataag |
43110263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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