View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12527_low_1 (Length: 848)
Name: NF12527_low_1
Description: NF12527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12527_low_1 |
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| [»] scaffold0027 (4 HSPs) |
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Alignment Details
Target: scaffold0027 (Bit Score: 296; Significance: 1e-166; HSPs: 4)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 245 - 668
Target Start/End: Original strand, 46040 - 46461
Alignment:
| Q |
245 |
ctatcttggttcagtgcagtttggttttctttttattgcgatatttgttgcgcttagattttacatatcagtttagactcattttcaactaatgatcact |
344 |
Q |
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| T |
46040 |
ctatcttgatttagtgcagtttggttttcttcttgttgtgatatttgttgcacttagattttacatatcagtttagactcattttcaactaatgatcact |
46139 |
T |
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| Q |
345 |
tatacatcaacactacatattcaaatgcgtatttagatcgctttaatcatgtaactttttgtaggcattattataccgatttatgatattgacttcaatg |
444 |
Q |
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| T |
46140 |
tatacatcaacactacatattcaaatgcgtatttagatcgctttaatcatgtaactttttgtaggc---attataccgatttatgatattgacttcaatg |
46236 |
T |
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| Q |
445 |
atgtaaatttagttgcaaattcatcttttaagtttcaatgacacaaaatttttattgttcttgattttatctaccgattcaaatga--atannnnnnnna |
542 |
Q |
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| T |
46237 |
atgtaaatttagttgcaatttcatcttttaagtttcaatgacacaaaatttttattgttgttgattttatctaccgatttaaatgaatatatttttttta |
46336 |
T |
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| Q |
543 |
atnnnnnnnntatgaaagagaaattgagtaacatagcaactcatttgtgaaatttgaccgagaagttaattcgttcttattaacattttattttcctagt |
642 |
Q |
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| T |
46337 |
at-aaaaaaatatgaaagagaaaccgagtaagatagcaactcatttgtgaaatttgaccgagaagttaattcgctcttattaacattttattttcctagt |
46435 |
T |
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| Q |
643 |
ttagtctgttcaagaaaaatgctaaa |
668 |
Q |
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| T |
46436 |
ttagtctgttcaagaaaaatgctaaa |
46461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 19 - 178
Target Start/End: Original strand, 45805 - 45959
Alignment:
| Q |
19 |
aattagcctgaaattgagcataggattcctatcacatagaggtactcctacgtactccctcatttttgtagggatgatgctactcggcattccaaatctt |
118 |
Q |
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| T |
45805 |
aattagcctgaaattgaacataggattcctatcacatagaggtactcctac----tccctaatttttgtagggaagatgctactcggcattccaaatctt |
45900 |
T |
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| Q |
119 |
tgtttcttttaataaaaattctttcatgagnnnnnnncgtaagaaaaaattatatgatga |
178 |
Q |
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| T |
45901 |
tgtttcttttaataaaaattctttcatgagttttttt-gtaagaaaaaattatatgatga |
45959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 751 - 836
Target Start/End: Original strand, 46777 - 46862
Alignment:
| Q |
751 |
tttgcggcttatcgacgtcgtgttccctccatttttgtgcgtctgcatgttatctcctcgttgtcgtagcccttcctttgcctttg |
836 |
Q |
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| T |
46777 |
tttgcggcttatcgacgtcgtgttccctccatttttgtgcgtctgcatgtcatctcctcgttgtcgtagcccttcctttgcctttg |
46862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027; HSP #4
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 666 - 758
Target Start/End: Original strand, 46533 - 46625
Alignment:
| Q |
666 |
aaaccaaaccttcaccaaattgaagaactgaagcgtaattcattctatcattcagcagcttcattctattcactcgggctcgtgctttgcggc |
758 |
Q |
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| T |
46533 |
aaaccaaaccttcaccaaattgaagaactgaagcgtaattcatctcatcattcagcagcttcattctattcactccggctcgtgctttgcggc |
46625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 763 - 834
Target Start/End: Complemental strand, 26605358 - 26605288
Alignment:
| Q |
763 |
cgacgtcgtgttccctccatttttgtgcgtctgcatgttatctcctcgttgtcgtagcccttcctttgcctt |
834 |
Q |
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| T |
26605358 |
cgacgtcgtgttccctccatttt-gtgcgtctgcgtgtcatctcctcggtgttgtagccgctcctttgcctt |
26605288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 424 - 474
Target Start/End: Complemental strand, 51629039 - 51628989
Alignment:
| Q |
424 |
tttatgatattgacttcaatgatgtaaatttagttgcaaattcatctttta |
474 |
Q |
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| T |
51629039 |
tttatgctattaacttaaatgatgtgaatttatttgcaaattcatctttta |
51628989 |
T |
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