View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12527_low_11 (Length: 295)
Name: NF12527_low_11
Description: NF12527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12527_low_11 |
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| [»] scaffold0227 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 4 - 275
Target Start/End: Original strand, 35742278 - 35742546
Alignment:
| Q |
4 |
agtagcttcgagtgtaagatcaatcagattttgtgctttctcgagacaaattgacttcatacttggattaaattctatcaataagacttcgagagtagga |
103 |
Q |
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| T |
35742278 |
agtagctttgagtgcaagatcaatcagattatttgctttcttgagacaaattgacttcatctttggattaaattctatcaataagacttcaagagtagga |
35742377 |
T |
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| Q |
104 |
atagcaaaatcaaaatattcaaaatcttcacatgatgcaatatgaagatgtttaagcaacggacaaccagaaataagactttcgagtgcaccgggctcga |
203 |
Q |
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| T |
35742378 |
ggagcaaaatcaaaatattcaaattctttacataatacaaaatgaagatttttaagtaacggacagccagaaataagactctcgaatgcaccgggctcga |
35742477 |
T |
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| Q |
204 |
atctaacaaacactaataagtgaagttcaagcaatttttcaaacccacagaaatcaggtggaattgacaagt |
275 |
Q |
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| T |
35742478 |
atctaacaaac---aataagtgaagttcaagcaatctttcaaacccagagaaatcaggtggaattgacaagt |
35742546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 278
Target Start/End: Original strand, 35748645 - 35748917
Alignment:
| Q |
3 |
tagtagcttcgagtgtaagatcaatcagattttgtgctttctcgagacaaattgacttcatacttggattaaattctatcaataagacttcgagagtagg |
102 |
Q |
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| T |
35748645 |
tagtagctttgagtgtaagatcaatcaaattaattgctttcttgagacaaattgacttcatctcttgatgaaattgtagcaataagactttgagagtagt |
35748744 |
T |
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| Q |
103 |
aatagcaaaatcaaaatattcaaaatcttcacatgatgcaatatgaagatgtttaagcaacggacaaccagaaataagactttcgagtgcaccgggctcg |
202 |
Q |
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| T |
35748745 |
aacagaaatatcaaaatattcaaaaccttcacaaaattgaatgctgagcttttcaagtaatggacagccagaaataagaccctcaagtgcaccggactcg |
35748844 |
T |
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| Q |
203 |
aatctaacaaacacta-ataagtgaagttcaagcaatttttcaaacccacagaaatcaggtggaattgacaagttaa |
278 |
Q |
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| T |
35748845 |
aatgt----aacattagataagtgaagattaagcaatcttttaaagcctcagaaatcatgtggaattgacaagttaa |
35748917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 35737573 - 35737619
Alignment:
| Q |
16 |
tgtaagatcaatcagattttgtgctttctcgagacaaattgacttca |
62 |
Q |
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| T |
35737573 |
tgtaagatcaataagattgtgtgcttttttgagacaaattgacttca |
35737619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 278
Target Start/End: Original strand, 35737728 - 35737780
Alignment:
| Q |
226 |
aagttcaagcaatttttcaaacccacagaaatcaggtggaattgacaagttaa |
278 |
Q |
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| T |
35737728 |
aagttcaagcaatcttttaaagccacataaattaggtggaattgagaagttaa |
35737780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 3104 - 3149
Alignment:
| Q |
19 |
aagatcaatcagattttgtgctttctcgagacaaattgacttcata |
64 |
Q |
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| T |
3104 |
aagatcagtcagattctttgctttcttgagacaaattgacttcata |
3149 |
T |
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