View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12527_low_13 (Length: 259)

Name: NF12527_low_13
Description: NF12527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12527_low_13
NF12527_low_13
[»] scaffold0027 (3 HSPs)
scaffold0027 (162-247)||(46777-46862)
scaffold0027 (77-169)||(46533-46625)
scaffold0027 (18-79)||(46400-46461)
[»] chr2 (1 HSPs)
chr2 (174-245)||(26605288-26605358)


Alignment Details
Target: scaffold0027 (Bit Score: 82; Significance: 8e-39; HSPs: 3)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 162 - 247
Target Start/End: Original strand, 46777 - 46862
Alignment:
Q  162 tttgcggcttatcgacgtcgtgttccctccatttttgtgcgtctgcatgttatctcctcgttgtcgtagcccttcctttgcctttg 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  46777 tttgcggcttatcgacgtcgtgttccctccatttttgtgcgtctgcatgtcatctcctcgttgtcgtagcccttcctttgcctttg 46862  T

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Target: scaffold0027; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 77 - 169
Target Start/End: Original strand, 46533 - 46625
Alignment:
Q  77 aaaccaaaccttcaccaaattgaagaactgaagcgtaattcattctatcattcagcagcttcattctattcactcgggctcgtgctttgcggc 169  Q
    |||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||| |||||||||||||||||    
T  46533 aaaccaaaccttcaccaaattgaagaactgaagcgtaattcatctcatcattcagcagcttcattctattcactccggctcgtgctttgcggc 46625  T

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Target: scaffold0027; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 46400 - 46461
Alignment:
Q  18 gttaattcgttcttattaacattttattttcctagtttagtctgttcaagaaaaatgctaaa 79  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46400 gttaattcgctcttattaacattttattttcctagtttagtctgttcaagaaaaatgctaaa 46461  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 174 - 245
Target Start/End: Complemental strand, 26605358 - 26605288
Alignment:
Q  174 cgacgtcgtgttccctccatttttgtgcgtctgcatgttatctcctcgttgtcgtagcccttcctttgcctt 245  Q
    ||||||||||||||||||||||| |||||||||| ||| ||||||||| ||| ||||||  |||||||||||    
T  26605358 cgacgtcgtgttccctccatttt-gtgcgtctgcgtgtcatctcctcggtgttgtagccgctcctttgcctt 26605288  T

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