View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12527_low_15 (Length: 242)
Name: NF12527_low_15
Description: NF12527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12527_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 39521478 - 39521572
Alignment:
| Q |
1 |
tcattgttctttttcttctctctttcatttatcaacgcacgttcttaatgaagaaatcgacgtttatgcgtaatgccgagaaatttcactttcaac |
96 |
Q |
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| T |
39521478 |
tcattgttctttt-cttctctctttcatttatcaacgcacgttcttaatgaagaaatcgacgtttatgcgtaatgccgagaaatttcactttcaac |
39521572 |
T |
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Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 39521607 - 39521662
Alignment:
| Q |
131 |
taatccgaacgagagtcatgtgtgaattgtgatcaagtgaaactgaaacctcacga |
186 |
Q |
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| T |
39521607 |
taatccgaacgagagtcatgtgtgaattgtgatcaagtgaaactgaaaccacacga |
39521662 |
T |
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