View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12527_low_18 (Length: 235)

Name: NF12527_low_18
Description: NF12527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12527_low_18
NF12527_low_18
[»] chr7 (2 HSPs)
chr7 (16-215)||(1368630-1368829)
chr7 (16-96)||(24840896-24840976)
[»] chr8 (4 HSPs)
chr8 (16-96)||(18179988-18180068)
chr8 (106-217)||(23571563-23571674)
chr8 (23-95)||(5646347-5646419)
chr8 (16-79)||(26375603-26375666)
[»] chr1 (2 HSPs)
chr1 (105-191)||(7657611-7657697)
chr1 (45-93)||(28660058-28660106)
[»] chr4 (1 HSPs)
chr4 (63-97)||(52900489-52900523)


Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 16 - 215
Target Start/End: Original strand, 1368630 - 1368829
Alignment:
Q  16 atgaatgtaactaagtgtcagctagcgaacgtgaatgttgttgatagttttgttgccacaatggaagaatacattaaagaatccaccaatgagaagattt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1368630 atgaatgtaactaagtgtcagctagcgaacgtgaatgttgttgatagttttgttgccacaatggaagaatacattaaggaatccaccaatgagaagattt 1368729  T
Q  116 gtacaacatatttctctaataagaagccgcggttatcctctgatgcatgctcagagatgccagaaataattatcacaaaaattgagagtacgatggatgt 215  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  1368730 gtacaacatatttctctaataagaagccgcggttatcctccgatgcatgctcagagatgccagaaataattatcaccgaaattgagagtacgatggatgt 1368829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 24840896 - 24840976
Alignment:
Q  16 atgaatgtaactaagtgtcagctagcgaacgtgaatgttgttgatagttttgttgccacaatggaagaatacattaaagaa 96  Q
    ||||||||||||||| ||||| || | ||||||||||||| |||||||||||| |||||||| |||| |||||||||||||    
T  24840896 atgaatgtaactaagggtcagttacctaacgtgaatgttgctgatagttttgtcgccacaatagaagtatacattaaagaa 24840976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 18180068 - 18179988
Alignment:
Q  16 atgaatgtaactaagtgtcagctagcgaacgtgaatgttgttgatagttttgttgccacaatggaagaatacattaaagaa 96  Q
    ||||||||||||||||||||| || ||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||    
T  18180068 atgaatgtaactaagtgtcagttaccgaacgtgaatgttgctgacagttttgttgctacaatggaagaatacattaaagaa 18179988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 106 - 217
Target Start/End: Original strand, 23571563 - 23571674
Alignment:
Q  106 gagaagatttgtacaacatatttctctaataagaagccgcggttatcctctgatgcatgctcagagatgccagaaataattatcacaaaaattgagagta 205  Q
    |||||||||||||||||| ||||||||||| ||||||  | |||||||||  |||||||||| || ||||||| || |||||||||  ||||||||||||    
T  23571563 gagaagatttgtacaacagatttctctaatgagaagctacagttatcctccaatgcatgctcggatatgccaggaacaattatcaccgaaattgagagta 23571662  T
Q  206 cgatggatgtca 217  Q
     | |||||||||    
T  23571663 tggtggatgtca 23571674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 5646419 - 5646347
Alignment:
Q  23 taactaagtgtcagctagcgaacgtgaatgttgttgatagttttgttgccacaatggaagaatacattaaaga 95  Q
    |||||||| ||||| || | ||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  5646419 taactaagggtcagttacctaacgtgaatgttgctgatagttttgttgccacaatggaagaatacatgaaaga 5646347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 26375603 - 26375666
Alignment:
Q  16 atgaatgtaactaagtgtcagctagcgaacgtgaatgttgttgatagttttgttgccacaatgg 79  Q
    ||||||||||||||||||||| || |||| |||||||||| |||||||||| ||||||||||||    
T  26375603 atgaatgtaactaagtgtcagttaccgaaagtgaatgttgctgatagttttattgccacaatgg 26375666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 105 - 191
Target Start/End: Original strand, 7657611 - 7657697
Alignment:
Q  105 tgagaagatttgtacaacatatttctctaataagaagccgcggttatcctctgatgcatgctcagagatgccagaaataattatcac 191  Q
    ||||||||||||||||||| ||||||||||| | ||||||| ||||||||| ||||  ||||| ||||||||||||| |||| ||||    
T  7657611 tgagaagatttgtacaacagatttctctaatgaaaagccgcagttatcctccgatgtctgctcggagatgccagaaacaattgtcac 7657697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 28660106 - 28660058
Alignment:
Q  45 cgtgaatgttgttgatagttttgttgccacaatggaagaatacattaaa 93  Q
    |||||| |||| ||||||||||| ||||||| |||||||||||||||||    
T  28660106 cgtgaacgttgctgatagttttggtgccacattggaagaatacattaaa 28660058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 63 - 97
Target Start/End: Original strand, 52900489 - 52900523
Alignment:
Q  63 ttttgttgccacaatggaagaatacattaaagaat 97  Q
    |||||||||||||||||||||||||||||||||||    
T  52900489 ttttgttgccacaatggaagaatacattaaagaat 52900523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University