View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12527_low_19 (Length: 225)
Name: NF12527_low_19
Description: NF12527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12527_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 15 - 209
Target Start/End: Complemental strand, 42307132 - 42306939
Alignment:
| Q |
15 |
aaggccataaattctgtctattaatttgaatgtcgttcatattaatcctatttgttgtgtattaatgtgaatgtctttgccaggttgttgggtcacctga |
114 |
Q |
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| T |
42307132 |
aaggccataaattctgtctattaatttgaatgtcgttcatattaa-cctatttgttgtgtattaatgtgaatgtctttgccaggttgttgggtcacctga |
42307034 |
T |
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| Q |
115 |
ggaaactagtagactcttgttatgtgaagcaacacttactgtgatgagacagtgcttctatctccttggaattgaaccagttgacaagttatgac |
209 |
Q |
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| T |
42307033 |
ggaaactagtagactcttgttatgtgaagcaacacttactgtgatgagacagtgcttctatctccttggaattgaaccagttgacaagttatgac |
42306939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 60 - 208
Target Start/End: Original strand, 51571336 - 51571484
Alignment:
| Q |
60 |
tcctatttgttgtgtattaatgtgaatgtctttgccaggttgttgggtcacctgaggaaactagtagactcttgttatgtgaagcaacacttactgtgat |
159 |
Q |
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| T |
51571336 |
tcctatttgctgtgtattaatttgaatgcctttgtcaggttgttgggtcgcctgaggaaactagtagactcttgttatgtgaagcaacacttgttgtgat |
51571435 |
T |
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| Q |
160 |
gagacagtgcttctatctccttggaattgaaccagttgacaagttatga |
208 |
Q |
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| T |
51571436 |
gagacattgcttctatctccttggaattgatccagtttacaagttatga |
51571484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 60 - 206
Target Start/End: Complemental strand, 47971706 - 47971560
Alignment:
| Q |
60 |
tcctatttgttgtgtattaatgtgaatgtctttgccaggttgttgggtcacctgaggaaactagtagactcttgttatgtgaagcaacacttactgtgat |
159 |
Q |
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||||||||| |||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
47971706 |
tcctatttgctgtgtattaatgtgaatgcctttgtcaggttgttgggtcgccggaggaaactagtagactcttgttatgtgaagcaacacttattgtgat |
47971607 |
T |
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| Q |
160 |
gagacagtgcttctatctccttggaattgaaccagttgacaagttat |
206 |
Q |
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||| || ||||||||||||||||||||||| |||||| ||||||||| |
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| T |
47971606 |
gaggcattgcttctatctccttggaattgatccagtttacaagttat |
47971560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 89 - 206
Target Start/End: Original strand, 34035250 - 34035367
Alignment:
| Q |
89 |
ctttgccaggttgttgggtcacctgaggaaactagtagactcttgttatgtgaagcaacacttactgtgatgagacagtgcttctatctccttggaattg |
188 |
Q |
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||||| |||||||| || |||||||||||||||||||||| ||| ||||||||||||| |||||||||| ||||||| |||||||||||||||| |
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| T |
34035250 |
ctttggcaggttgtaggaacacctgaggaaactagtagacttttgctatgtgaagcaactgcagttgtgatgagaaagtgcttttatctccttggaattg |
34035349 |
T |
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| Q |
189 |
aaccagttgacaagttat |
206 |
Q |
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|||| ||| |||| |||| |
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| T |
34035350 |
aacctgtttacaaattat |
34035367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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