View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12527_low_7 (Length: 361)
Name: NF12527_low_7
Description: NF12527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12527_low_7 |
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| [»] scaffold0019 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 7 - 357
Target Start/End: Complemental strand, 11996802 - 11996452
Alignment:
| Q |
7 |
gatgaattgattgtggaagactcatgggagaggcaagttggtggtgattgatggctgaaaacgtaactcaccgtcacattggtctctgactcaacaaaac |
106 |
Q |
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| T |
11996802 |
gatgaattgattgtggaagactcatgggagaggcaagttggtggtgattgatggctgaaagcgtaactcaccgtcacattggtctctgactcaataaaac |
11996703 |
T |
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| Q |
107 |
cccaattagatccttcaatttgttagtaactttagtcccggatgtggcaaacgaaaagagctcatggactgctgatgtattcccagggaccaaaatgaaa |
206 |
Q |
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| T |
11996702 |
cccaattagatccttcaatttgttagtaactttagtcccggatgtggcaaacgaaaagagctcatggactgctgatgtattcccagggaccaaaatgaaa |
11996603 |
T |
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| Q |
207 |
gaaaaccnnnnnnnttcttcattttccaaacatgttattttctttctcttcgttgacataacatcctttcagattatttcaaacaatttttagtatgtga |
306 |
Q |
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| T |
11996602 |
gaaaaccaaaaaaattcttcattttccaaacatgttattttctttctcttcgttgacataacatcctttcagattatatcaaacaatttttagcatgtga |
11996503 |
T |
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| Q |
307 |
tcctccaatgcatgtttcaaccatccaacaccaaatcaacttagaaaccta |
357 |
Q |
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| T |
11996502 |
tcctccaatgcatgtttcaaccatccaacaccaaatcaacttagaaaccta |
11996452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 100 - 211
Target Start/End: Original strand, 106743 - 106854
Alignment:
| Q |
100 |
acaaaaccccaattagatccttcaatttgttagtaactttagtcccggatgtggcaaacgaaaagagctcatggactgctgatgtattcccagggaccaa |
199 |
Q |
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| T |
106743 |
acaaaacccctattagatccttcaatttgttagtcaatttagtctctgatgtggaaaatgaaagaggcacatggactgctgatgtattcccagcgaccaa |
106842 |
T |
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| Q |
200 |
aatgaaagaaaa |
211 |
Q |
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| T |
106843 |
aatgaaaaaaaa |
106854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 106408 - 106467
Alignment:
| Q |
7 |
gatgaattgattgtggaagactcatgggagaggcaagttggtggtgattgatggctgaaa |
66 |
Q |
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| T |
106408 |
gatgaattgattgtggaagactcatggaagaggcaagttggtggtgattgatggctgaaa |
106467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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