View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12528_high_1 (Length: 636)

Name: NF12528_high_1
Description: NF12528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12528_high_1
NF12528_high_1
[»] chr1 (6 HSPs)
chr1 (5-156)||(47189299-47189450)
chr1 (73-184)||(51285250-51285361)
chr1 (83-189)||(48494886-48494992)
chr1 (84-184)||(47508240-47508340)
chr1 (126-184)||(5733165-5733223)
chr1 (126-184)||(12307935-12307993)
[»] chr6 (4 HSPs)
chr6 (357-477)||(4150633-4150753)
chr6 (204-321)||(4150765-4150890)
chr6 (88-169)||(11139353-11139434)
chr6 (84-184)||(92312-92412)
[»] chr7 (3 HSPs)
chr7 (73-146)||(32635363-32635436)
chr7 (84-184)||(37125557-37125657)
chr7 (140-184)||(11033491-11033535)
[»] chr8 (1 HSPs)
chr8 (84-184)||(39312538-39312638)
[»] scaffold0026 (1 HSPs)
scaffold0026 (112-181)||(91565-91634)
[»] scaffold1342 (1 HSPs)
scaffold1342 (126-184)||(1231-1289)
[»] chr2 (3 HSPs)
chr2 (126-184)||(4009258-4009316)
chr2 (100-189)||(36620177-36620266)
chr2 (87-184)||(43326105-43326202)
[»] chr4 (1 HSPs)
chr4 (84-184)||(55403338-55403438)
[»] chr5 (1 HSPs)
chr5 (87-180)||(13627363-13627456)


Alignment Details
Target: chr1 (Bit Score: 128; Significance: 7e-66; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 5 - 156
Target Start/End: Complemental strand, 47189450 - 47189299
Alignment:
Q  5 tggtcgagagagaagaaagttgaactcgcgcaaggccagacagaagagagaagagtgttgtttcagaaaaaagtgatagtggcatggttgtaaatttcat 104  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||    
T  47189450 tggtctagagagaagaaagttgaactcgcgcaaggccagacagaagagagaagagcgttgtttcagaaaaaagtgatagtgtcatggttgtatatttcat 47189351  T
Q  105 attaactcaagggtattttgataatttctcaaaaataatgggtaggccatgg 156  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  47189350 attaactcaagggtattttggtaatttcccaaaaataatgggtaggccatgg 47189299  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 73 - 184
Target Start/End: Complemental strand, 51285361 - 51285250
Alignment:
Q  73 aaaagtgatagtggcatggttgtaaatttcatattaactcaagggtattttgataatttctcaaaaataatgggtaggccatggtcattccctgtcccca 172  Q
    ||||||||  |||||||||||||| |||| ||||||||| |||||||||||| |||||||||||||||||||||  |||||||| | | |||||||||||    
T  51285361 aaaagtgagggtggcatggttgtagattttatattaacttaagggtattttggtaatttctcaaaaataatggggtggccatggccttcccctgtcccca 51285262  T
Q  173 cgtggctccgcc 184  Q
    ||||||||||||    
T  51285261 cgtggctccgcc 51285250  T

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Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 83 - 189
Target Start/End: Original strand, 48494886 - 48494992
Alignment:
Q  83 gtggcatggttgtaaatttcatattaactcaagggtattttgataatttctcaaaaataatgggtaggccatggtcattccctgtccccacgtggctccg 182  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||  || ||||||||||  |  ||||| ||| |||||||||||||||| ||||    
T  48494886 gtggcatggttgtaaatttcatattaactcaagggtattttggtaattttccacaaataatgggacgatcatggccatcccctgtccccacgtggttccg 48494985  T
Q  183 ccgctgt 189  Q
    || ||||    
T  48494986 ccactgt 48494992  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 84 - 184
Target Start/End: Complemental strand, 47508340 - 47508240
Alignment:
Q  84 tggcatggttgtaaatttcatattaactcaagggtattttgataatttctcaaaaataatgggtaggccatggtcattccctgtccccacgtggctccgc 183  Q
    ||||||||||||||| ||||| ||||| ||||||||||||| |||||||   ||| | |||||  |||||||| ||| |||||||| |||||||||||||    
T  47508340 tggcatggttgtaaaattcattttaacccaagggtattttggtaatttccacaaattgatggggtggccatggccatcccctgtcctcacgtggctccgc 47508241  T
Q  184 c 184  Q
    |    
T  47508240 c 47508240  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 5733223 - 5733165
Alignment:
Q  126 taatttctcaaaaataatgggtaggccatggtcattccctgtccccacgtggctccgcc 184  Q
    |||||||||| ||||||||||||||| |||| ||| ||| ||||||| |||||||||||    
T  5733223 taatttctcataaataatgggtaggctatggccatccccagtccccaagtggctccgcc 5733165  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 12307935 - 12307993
Alignment:
Q  126 taatttctcaaaaataatgggtaggccatggtcattccctgtccccacgtggctccgcc 184  Q
    ||||||| || || ||||||||||||||||| ||| ||||||||||| | |||||||||    
T  12307935 taatttcacagaactaatgggtaggccatggccataccctgtccccatgcggctccgcc 12307993  T

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Target: chr6 (Bit Score: 81; Significance: 8e-38; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 357 - 477
Target Start/End: Complemental strand, 4150753 - 4150633
Alignment:
Q  357 tgatcgcagatggaggagccctatggcataaagccaaaaatcaaccattttaagccgccatggcgctgccattcttcacaaattgtacatggcgtttgtt 456  Q
    ||||||| |||||||||||  ||||||| ||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||  |||||||||||||    
T  4150753 tgatcgcggatggaggagcagtatggcagaaagccaaaaatcaaccattttaagccaccaaggcgctgccatccttcacaaattggccatggcgtttgtt 4150654  T
Q  457 aaaaaattcgccaccgcaatc 477  Q
    |||||||| ||||||||||||    
T  4150653 aaaaaatttgccaccgcaatc 4150633  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 204 - 321
Target Start/End: Complemental strand, 4150890 - 4150765
Alignment:
Q  204 aagtgaaaattaaatgagtataaatagctgaaagtaattaaattaactaaaaactatagct-aaaagtaa-aactcgaacaaactagt------tgagta 295  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||  ||||||||||||      ||| ||    
T  4150890 aagtgaaaattgaatgagtataaatagctgaaagtaaataaattaactaaaaactatagctaaaaagtaacaacctgaacaaactagttactaatgacta 4150791  T
Q  296 actcgacaaatccaaaaacgatccaa 321  Q
    ||||| ||||||||||||||||||||    
T  4150790 actcggcaaatccaaaaacgatccaa 4150765  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 88 - 169
Target Start/End: Complemental strand, 11139434 - 11139353
Alignment:
Q  88 atggttgtaaatttcatattaactcaagggtattttgataatttctcaaaaataatgggtaggccatggtcattccctgtcc 169  Q
    ||||||||||||||||| |||||  |||||||||||||||||||||  ||||||||||| ||||||||| ||| ||| ||||    
T  11139434 atggttgtaaatttcattttaacctaagggtattttgataatttctataaaataatggggaggccatggccatccccagtcc 11139353  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 84 - 184
Target Start/End: Complemental strand, 92412 - 92312
Alignment:
Q  84 tggcatggttgtaaatttcatattaactcaagggtattttgataatttctcaaaaataatgggtaggccatggtcattccctgtccccacgtggctccgc 183  Q
    ||||||||||||||| || | ||||  |||| |||||| |  ||||||| || || ||||||||||||||||| ||| ||||||||||| ||||||||||    
T  92412 tggcatggttgtaaaattaagattatatcaaaggtattatagtaatttcacagaattaatgggtaggccatggccataccctgtccccatgtggctccgc 92313  T
Q  184 c 184  Q
    |    
T  92312 c 92312  T

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Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 73 - 146
Target Start/End: Complemental strand, 32635436 - 32635363
Alignment:
Q  73 aaaagtgatagtggcatggttgtaaatttcatattaactcaagggtattttgataatttctcaaaaataatggg 146  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  32635436 aaaagtgagggtggcatggttgtaaatttcatattaactcaagggtattttggtaatttctcataaataatggg 32635363  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 184
Target Start/End: Complemental strand, 37125657 - 37125557
Alignment:
Q  84 tggcatggttgtaaatttcatattaactcaagggtattttgataatttctcaaaaataatgggtaggccatggtcattccctgtccccacgtggctccgc 183  Q
    ||||||||||||||| || | ||||  ||||||||||| |  |||||||  | || ||||||||||||||||| ||| | ||||||||| ||||||||||    
T  37125657 tggcatggttgtaaaattaaaattatatcaagggtattatagtaatttcaaagaattaatgggtaggccatggccatactctgtccccatgtggctccgc 37125558  T
Q  184 c 184  Q
    |    
T  37125557 c 37125557  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 11033535 - 11033491
Alignment:
Q  140 taatgggtaggccatggtcattccctgtccccacgtggctccgcc 184  Q
    |||||||  |||||||| |||||||||||| ||||||||||||||    
T  11033535 taatgggatggccatggccattccctgtccacacgtggctccgcc 11033491  T

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Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 84 - 184
Target Start/End: Complemental strand, 39312638 - 39312538
Alignment:
Q  84 tggcatggttgtaaatttcatattaactcaagggtattttgataatttctcaaaaataatgggtaggccatggtcattccctgtccccacgtggctccgc 183  Q
    ||||||||||||||| ||||| ||||| ||||||||||||| |||||||   ||| |||||||  |||||||| ||| || ||||| |||||||||||||    
T  39312638 tggcatggttgtaaaattcattttaacccaagggtattttggtaatttccacaaattaatggggtggccatggccatcccatgtcctcacgtggctccgc 39312539  T
Q  184 c 184  Q
    |    
T  39312538 c 39312538  T

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Target: scaffold0026 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 181
Target Start/End: Complemental strand, 91634 - 91565
Alignment:
Q  112 caagggtattttgataatttctcaaaaataatgggtaggccatggtcattccctgtccccacgtggctcc 181  Q
    |||||||||| |||||||||| || ||||| |||||||||||||| ||| |||||||| |||||||||||    
T  91634 caagggtattatgataatttcacagaaatactgggtaggccatggccataccctgtcctcacgtggctcc 91565  T

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Target: scaffold1342 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1342
Description:

Target: scaffold1342; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 1289 - 1231
Alignment:
Q  126 taatttctcaaaaataatgggtaggccatggtcattccctgtccccacgtggctccgcc 184  Q
    ||||||| ||||||||||||| ||||||||| ||| ||||||||||| |||||||||||    
T  1289 taatttcacaaaaataatgggcaggccatggccatcccctgtccccaagtggctccgcc 1231  T

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Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 4009316 - 4009258
Alignment:
Q  126 taatttctcaaaaataatgggtaggccatggtcattccctgtccccacgtggctccgcc 184  Q
    ||||||| ||||||||||||| ||||||||| ||| ||||||||||| |||||||||||    
T  4009316 taatttcacaaaaataatgggcaggccatggccatcccctgtccccaagtggctccgcc 4009258  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 189
Target Start/End: Original strand, 36620177 - 36620266
Alignment:
Q  100 ttcatattaactcaagggtattttgataatttctcaaaaataatgggtaggccatggtcattccctgtccccacgtggctccgccgctgt 189  Q
    |||| |||| || ||||||||| || ||||||| ||||| ||||||| ||| ||| | ||| ||| |||| |||||||||||||| ||||    
T  36620177 ttcaaattagcttaagggtattatggtaatttcacaaaattaatgggcaggacatcgccatacccagtcctcacgtggctccgccactgt 36620266  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 184
Target Start/End: Complemental strand, 43326202 - 43326105
Alignment:
Q  87 catggttgtaaatttcatattaactcaagggtattttgataatttctcaaaaataatgggtaggccatggtcattccctgtccccacgtggctccgcc 184  Q
    |||||||||||| || | ||||  ||||||||||| |  ||||||| || || ||||||||||||||||   || |||||||| || |||||||||||    
T  43326202 catggttgtaaaattaaaattatatcaagggtattatagtaatttcacagaattaatgggtaggccatgactataccctgtcctcatgtggctccgcc 43326105  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 184
Target Start/End: Complemental strand, 55403438 - 55403338
Alignment:
Q  84 tggcatggttgtaaatttcatattaactcaagggtattttgataatttctcaaaaataatgggtaggccatggtcattccctgtccccacgtggctccgc 183  Q
    ||||||||||||||| || | ||||  ||||||||||| |  ||||||| || || ||||||||||||||||  ||| | ||||||||| ||||||||||    
T  55403438 tggcatggttgtaaaattaaaattatatcaagggtattatagtaatttcacagaattaatgggtaggccatgaccatactctgtccccatgtggctccgc 55403339  T
Q  184 c 184  Q
    |    
T  55403338 c 55403338  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 87 - 180
Target Start/End: Original strand, 13627363 - 13627456
Alignment:
Q  87 catggttgtaaatttcatattaactcaagggtattttgataatttctcaaaaataatgggtaggccatggtcattccctgtccccacgtggctc 180  Q
    |||||||||||| ||||| ||||  |||| |||||||| |||||| |  ||| |||||||  |||||||| ||| |||||||| ||||||||||    
T  13627363 catggttgtaaaattcattttaatccaagagtattttggtaatttttacaaattaatggggtggccatggccatcccctgtcctcacgtggctc 13627456  T

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