View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12528_high_10 (Length: 419)
Name: NF12528_high_10
Description: NF12528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12528_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 18 - 409
Target Start/End: Original strand, 52157812 - 52158202
Alignment:
| Q |
18 |
gttaaaacatctgaccaagacaaatttgggacagagggctgtgagatattagctgaaccagtttcagtttatcagattcttttaccaacaaaggtaaggt |
117 |
Q |
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| T |
52157812 |
gttaaaacatctgaccaagacaaatttgggacagagggctgtgagatattagctgaaccagtttcagtttatcagtttcttttaccaacaaaggtaaggt |
52157911 |
T |
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| Q |
118 |
agacaatttcttcacttcagataaagcaaaattgacacggctaaaaccttgcagcaagtgtgatttccaaagtcgctaaggataagttgtatatactgaa |
217 |
Q |
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| T |
52157912 |
agacaatttcttcacttcagataaagcaaaattgacacggccaaa-ccttgcagcaagtgtgatttccaaagtcgctaaggataagttgtatatactgaa |
52158010 |
T |
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| Q |
218 |
caatttaaataaaaaaggaaggcagcaaaggtggtatgagcattatttcaactagagttatacaaagatcatttttcttatatggtctttttgtttcctt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52158011 |
caatttaaataaaaaaggaaggcagcaaaggtggtatgagcattatttcaactagagttatacaaagatcatttttcttatatggtctttttgtttcctt |
52158110 |
T |
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| Q |
318 |
tcttgggaaaccagcacatggaagatggattatggaataggatgagcaggaaatcaatactagtaacatgcaaggaaaaaccaacttctctg |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
52158111 |
tcttgggaaaccagcacatggaagatggattatggaataggatgagcaggaaatcaatactagtaacatgcaaggaaaaagcaacttctctg |
52158202 |
T |
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