View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12528_high_13 (Length: 350)

Name: NF12528_high_13
Description: NF12528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12528_high_13
NF12528_high_13
[»] chr8 (3 HSPs)
chr8 (19-334)||(32536162-32536477)
chr8 (139-343)||(18481113-18481317)
chr8 (269-334)||(26440816-26440881)
[»] chr3 (11 HSPs)
chr3 (139-343)||(51976640-51976844)
chr3 (139-343)||(36684785-36684989)
chr3 (141-343)||(8705594-8705796)
chr3 (141-343)||(9057481-9057683)
chr3 (179-332)||(49758956-49759109)
chr3 (149-343)||(45736356-45736550)
chr3 (141-294)||(26390803-26390956)
chr3 (193-343)||(4978441-4978591)
chr3 (263-315)||(25131088-25131140)
chr3 (279-324)||(47165391-47165436)
chr3 (270-334)||(38998918-38998982)
[»] chr2 (4 HSPs)
chr2 (139-343)||(24543093-24543297)
chr2 (139-343)||(29894348-29894552)
chr2 (139-343)||(36364920-36365124)
chr2 (263-314)||(12555415-12555466)
[»] chr1 (8 HSPs)
chr1 (139-343)||(11351624-11351828)
chr1 (148-343)||(6784167-6784362)
chr1 (139-328)||(20639470-20639659)
chr1 (155-343)||(21515101-21515287)
chr1 (263-334)||(44839893-44839964)
chr1 (263-343)||(2536509-2536589)
chr1 (207-286)||(32988972-32989051)
chr1 (270-334)||(51080708-51080772)
[»] chr6 (2 HSPs)
chr6 (139-329)||(942573-942763)
chr6 (263-343)||(4513076-4513156)
[»] chr7 (2 HSPs)
chr7 (139-343)||(23820403-23820607)
chr7 (141-243)||(24808878-24808980)
[»] chr5 (3 HSPs)
chr5 (193-343)||(41197383-41197533)
chr5 (260-343)||(30376454-30376537)
chr5 (147-333)||(36779439-36779623)
[»] chr4 (6 HSPs)
chr4 (139-343)||(43989285-43989488)
chr4 (179-325)||(19315935-19316081)
chr4 (263-325)||(1394129-1394191)
chr4 (277-343)||(43813198-43813264)
chr4 (270-315)||(49407130-49407175)
chr4 (264-312)||(9633063-9633111)


Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 334
Target Start/End: Complemental strand, 32536477 - 32536162
Alignment:
Q  19 attgtgtgtctaaacacaacagatttggtcctagttggattgtttctctcctctttgatatgtttatgtgggacaggctgttggtctttactctttacac 118  Q
    ||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32536477 attgtgtgtctaaacacaacatatttggtcttagtcggattgtttctctcctctttgatatgtttatgtgggataggctgttggtctttactctttacac 32536378  T
Q  119 gacattgcagctactcttttattatgatcatgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaa 218  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||| |||||||||| |||||||    
T  32536377 gacattgcagctactcttttattatgatcatgtcgattttgctttggattacaagtttattgtagatcgctttcattcaaacctagacgataatagtgaa 32536278  T
Q  219 ctaggttgtattattcagacttgtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtg 318  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  32536277 ctaggttgtattattcaggcttgtaaacaattgattgcttgtaattttatgaactcttatgtcgagttcaattgaaaacaagttaatggggtcgctcgtg 32536178  T
Q  319 aattagctagggtagc 334  Q
    ||||||||||||||||    
T  32536177 aattagctagggtagc 32536162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 139 - 343
Target Start/End: Original strand, 18481113 - 18481317
Alignment:
Q  139 attatgatcatgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagac 238  Q
    |||||||  |||||||||||| |||||||| |||||||  ||| || |  ||| ||||||| ||||  ||||| |||||||||||||||||||||||| |    
T  18481113 attatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggc 18481212  T
Q  239 ttgtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagcttca 338  Q
    ||||| ||| ||| | | ||||||||||| ||||||| ||||||||||||||||||   |||| ||||||||| ||| | ||||||||||||||||  ||    
T  18481213 ttgtagatagttgttcgattgtaattttcagaactctcatgtcgagttcaataggaggtaagtcaatggggtcactcataaattagctagggtagcccca 18481312  T
Q  339 tctca 343  Q
    |||||    
T  18481313 tctca 18481317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 269 - 334
Target Start/End: Original strand, 26440816 - 26440881
Alignment:
Q  269 gaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagc 334  Q
    ||||||| ||||||||||||||||||  |||| ||||||||| |||| ||| ||||||||||||||    
T  26440816 gaactctcatgtcgagttcaataggaggcaagctaatggggttgctcatgagttagctagggtagc 26440881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 139 - 343
Target Start/End: Original strand, 51976640 - 51976844
Alignment:
Q  139 attatgatcatgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagac 238  Q
    |||||||  |||||||||||| |||||||| |||||||  ||| || |  ||| ||||||| ||||  ||||| |||||||||||||||||||||||| |    
T  51976640 attatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggc 51976739  T
Q  239 ttgtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagcttca 338  Q
    ||||| | | ||| ||| ||||||||||| ||||||| ||| ||||||||||||||  ||||  ||||||||||||| ||||||||||||||||||| ||    
T  51976740 ttgtagaaagttgtttgattgtaattttcagaactctcatgccgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagctcca 51976839  T
Q  339 tctca 343  Q
    |||||    
T  51976840 tctca 51976844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 139 - 343
Target Start/End: Original strand, 36684785 - 36684989
Alignment:
Q  139 attatgatcatgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagac 238  Q
    |||||||  |||||||||||| |||||||| ||||| |  ||| || |  ||| ||||||| ||||  ||||||||||||||||||||||| |||||| |    
T  36684785 attatgacaatgttgattttgttttggattgcaagtttgttgttgaacattttaattcaaacctaggtgatagtagtgaactaggttgtatcattcaggc 36684884  T
Q  239 ttgtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagcttca 338  Q
    ||||| | | ||| | | ||||||||||| ||||||| ||||||||||||||||||  |||| |||||||||||||| ||||||||||||||||||  ||    
T  36684885 ttgtagacagttgttcgattgtaattttcagaactctcatgtcgagttcaataggaggcaagctaatggggtcgctcatgaattagctagggtagcccca 36684984  T
Q  339 tctca 343  Q
    |||||    
T  36684985 tctca 36684989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 141 - 343
Target Start/End: Original strand, 8705594 - 8705796
Alignment:
Q  141 tatgatcatgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagactt 240  Q
    ||||| ||||||||||||| |||||||| ||||| |  ||| || || ||| ||||||| ||||  |||||||||||||||||||||||||||||| |||    
T  8705594 tatgaccatgttgattttgttttggattccaagtatgttgttgaacgttttaattcaaacctagttgatagtagtgaactaggttgtattattcaggctt 8705693  T
Q  241 gtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagcttcatc 340  Q
    |||   | ||| ||| ||||||||||| ||||||| ||||||||||||||||||  |||| ||||| |||||||  |||||||| |||||||||  ||||    
T  8705694 gtaggcagttgtttgattgtaattttcagaactctcatgtcgagttcaataggaggcaagctaatgaggtcgcttatgaattagttagggtagccccatc 8705793  T
Q  341 tca 343  Q
    |||    
T  8705794 tca 8705796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 141 - 343
Target Start/End: Original strand, 9057481 - 9057683
Alignment:
Q  141 tatgatcatgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagactt 240  Q
    ||||| ||||||||||||| |||||||| ||||| |  ||| || || ||| ||||||| ||||  |||||||||||||||||||||||||||||| |||    
T  9057481 tatgaccatgttgattttgttttggattccaagtatgttgttgaacgttttaattcaaacctagttgatagtagtgaactaggttgtattattcaggctt 9057580  T
Q  241 gtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagcttcatc 340  Q
    |||   | ||| ||| ||||||||||| ||||||| ||||||||||||||||||  |||| ||||| |||||||  |||||||| |||||||||  ||||    
T  9057581 gtaggcagttgtttgattgtaattttcagaactctcatgtcgagttcaataggaggcaagctaatgaggtcgcttatgaattagttagggtagccccatc 9057680  T
Q  341 tca 343  Q
    |||    
T  9057681 tca 9057683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 179 - 332
Target Start/End: Complemental strand, 49759109 - 49758956
Alignment:
Q  179 tgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagacttgtaaataattgattgcttgtaattttctgaactcttat 278  Q
    |||| |||| ||| ||||||| ||||| |||||||||||||||||||| ||||||||||||||||     ||| ||||||||||||||| ||||||||||    
T  49759109 tgtatatcgttttaattcaaacctagaggatagtagtgaactaggttgcattattcagacttgtaggctgttgcttgcttgtaattttcagaactcttat 49759010  T
Q  279 gtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggta 332  Q
    |||| |||||||||||  |||| ||||||| |||||| ||||||  ||||||||    
T  49759009 gtcgggttcaataggaggcaagctaatgggatcgctcatgaattgactagggta 49758956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 149 - 343
Target Start/End: Original strand, 45736356 - 45736550
Alignment:
Q  149 tgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagacttgtaaataa 248  Q
    ||||||||||| |||||||| ||||| |  |||  | || ||| ||| ||||||||| ||||| |||||| |||||||||||||| ||  |||||   ||    
T  45736356 tgttgattttgttttggatttcaagtttgttgttcaacgttttaatttaaatctagatgatagcagtgaattaggttgtattatttaggtttgtaggcaa 45736455  T
Q  249 ttgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagcttcatctca 343  Q
    ||| | | ||||||||||| ||||||| ||||||||||||||||||  ||    ||||||  ||||||| |||||||||||||||| ||||||||    
T  45736456 ttgttcgattgtaattttcagaactctcatgtcgagttcaataggaggcagaccaatgggaacgctcgtaaattagctagggtagcctcatctca 45736550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 141 - 294
Target Start/End: Complemental strand, 26390956 - 26390803
Alignment:
Q  141 tatgatcatgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagactt 240  Q
    |||||| |||| || ||||||||||||| |||| |   ||||||||| ||| | | ||| ||||| |||||||||||||||||||| ||||| ||  |||    
T  26390956 tatgataatgtcgactttgctttggatttcaaggcacttgtagatcgttttaactgaaacctagaagatagtagtgaactaggttgcattatacaagctt 26390857  T
Q  241 gtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaatagga 294  Q
    ||| | | ||| ||||||||| ||||   ||||||  |||||||||||||||||    
T  26390856 gtagacagttgtttgcttgtagtttttataactctcgtgtcgagttcaatagga 26390803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 193 - 343
Target Start/End: Complemental strand, 4978591 - 4978441
Alignment:
Q  193 attcaaatctagacgatagtagtgaactaggttgtattattcagacttgtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaatag 292  Q
    ||||||| ||||  |||| |||| |||||||||||||||||| | ||||||   | ||| | | || |||||||| ||||||| |||||||||| ||||     
T  4978591 attcaaacctaggtgataatagtaaactaggttgtattattctggcttgtaggcacttgttcggttataattttcagaactctcatgtcgagtttaatat 4978492  T
Q  293 gaaacaagttaatggggtcgctcgtgaattagctagggtagcttcatctca 343  Q
    || |||||  |||| ||||| || |||||||||||| |||||  |||||||    
T  4978491 gagacaagccaatgaggtcgttcatgaattagctagcgtagccacatctca 4978441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 263 - 315
Target Start/End: Complemental strand, 25131140 - 25131088
Alignment:
Q  263 ttttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctc 315  Q
    ||||||||||||| |||||||||||||||| ||  ||||||||||||||||||    
T  25131140 ttttctgaactctcatgtcgagttcaatagaaagtaagttaatggggtcgctc 25131088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 324
Target Start/End: Complemental strand, 47165436 - 47165391
Alignment:
Q  279 gtcgagttcaataggaaacaagttaatggggtcgctcgtgaattag 324  Q
    ||||||||||||||||  ||||| ||||||||||||||||||||||    
T  47165436 gtcgagttcaataggaggcaagtcaatggggtcgctcgtgaattag 47165391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 334
Target Start/End: Original strand, 38998918 - 38998982
Alignment:
Q  270 aactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagc 334  Q
    |||||| |||||||||| |||||||  |||| ||||||||||||||  |||||||| ||||||||    
T  38998918 aactctcatgtcgagtttaataggaggcaagctaatggggtcgctcacgaattagcgagggtagc 38998982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 139 - 343
Target Start/End: Original strand, 24543093 - 24543297
Alignment:
Q  139 attatgatcatgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagac 238  Q
    |||||||  |||||||||||| |||||||| |||||||  ||| || |  ||| ||||||| ||||  ||||| |||||||||||||||||||||||| |    
T  24543093 attatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggc 24543192  T
Q  239 ttgtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagcttca 338  Q
    ||||| ||| ||| | | ||||||||||| ||||||| ||||||||||||||||||  ||||  ||||||||||||| ||||||||||||||||||  ||    
T  24543193 ttgtagatagttgttcgattgtaattttcagaactctcatgtcgagttcaataggatgcaagccaatggggtcgctcatgaattagctagggtagcccca 24543292  T
Q  339 tctca 343  Q
    |||||    
T  24543293 tctca 24543297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 139 - 343
Target Start/End: Complemental strand, 29894552 - 29894348
Alignment:
Q  139 attatgatcatgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagac 238  Q
    |||||||  |||||||||||| |||||||| |||||||  ||| || |  ||| ||||||| ||||  ||||| |||||||||| ||||||||||||| |    
T  29894552 attatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactagattgtattattcaggc 29894453  T
Q  239 ttgtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagcttca 338  Q
    ||||| | | ||| | | ||||||||||| ||||||| ||||||||||||||||||  ||||  ||||||||||||| ||||||||||||||||||  ||    
T  29894452 ttgtagacagttgttcgattgtaattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagcccca 29894353  T
Q  339 tctca 343  Q
    |||||    
T  29894352 tctca 29894348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 139 - 343
Target Start/End: Original strand, 36364920 - 36365124
Alignment:
Q  139 attatgatcatgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagac 238  Q
    |||||||  |||||||||||| |||||||| |||||||  ||| || || ||| ||||||| ||||  ||||| ||||||||||||||||||||||| ||    
T  36364920 attatgacaatgttgattttgttttggattccaagtctgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcatac 36365019  T
Q  239 ttgtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagcttca 338  Q
    |||||   | ||| | | |||| |||||| ||||||  ||||||||||||||||||  ||||  |||| |||||||| ||||||||||||||||||  ||    
T  36365020 ttgtaggcagttgttcgattgtcattttcagaactcccatgtcgagttcaataggaggcaagccaatgaggtcgctcatgaattagctagggtagcccca 36365119  T
Q  339 tctca 343  Q
    |||||    
T  36365120 tctca 36365124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 314
Target Start/End: Complemental strand, 12555466 - 12555415
Alignment:
Q  263 ttttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgct 314  Q
    ||||| ||||||| ||||| ||||||||||||  ||||||||||||||||||    
T  12555466 ttttcagaactctcatgtcaagttcaataggaggcaagttaatggggtcgct 12555415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 4e-38; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 139 - 343
Target Start/End: Complemental strand, 11351828 - 11351624
Alignment:
Q  139 attatgatcatgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagac 238  Q
    |||||||  |||||||||||| |||||||| |||||||  ||| || |  ||| ||||||| ||||  ||||| |||||||||||||||||||||||| |    
T  11351828 attatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggc 11351729  T
Q  239 ttgtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagcttca 338  Q
    ||||| | | ||| | | ||||||||||| ||||||| ||||||||||||||||||  ||||  ||||||||||||| ||||||||||||||||||  ||    
T  11351728 ttgtagacagttgttcgattgtaattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagcccca 11351629  T
Q  339 tctca 343  Q
    |||||    
T  11351628 tctca 11351624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 148 - 343
Target Start/End: Original strand, 6784167 - 6784362
Alignment:
Q  148 atgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagacttgtaaata 247  Q
    |||||||||||| |||||||| |||||||  ||| || || ||| ||| ||| ||||  ||||| |||||||||||||||||||||||| |||||| | |    
T  6784167 atgttgattttgttttggattgcaagtctcttgttgaacgttttaatttaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtagaca 6784266  T
Q  248 attgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagcttcatctca 343  Q
     ||| | | |||| |||||| ||||||| ||||||||||||||||||  ||||  ||||||||||||  ||||||| ||||||||||| |||||||    
T  6784267 gttgttcgattgttattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgcttatgaattaactagggtagctccatctca 6784362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 139 - 328
Target Start/End: Original strand, 20639470 - 20639659
Alignment:
Q  139 attatgatcatgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagac 238  Q
    |||||||  |||||||||||| |||||||| ||||| |  ||| || |  ||| ||||||| ||||  |||||||||||||||||||||||||||||| |    
T  20639470 attatgacaatgttgattttgttttggattccaagtttgttgttgaacattttaattcaaacctaggtgatagtagtgaactaggttgtattattcaggc 20639569  T
Q  239 ttgtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctag 328  Q
    |||||   | ||| | | ||||||||||| ||||||| |||| |||||||||||||  ||||  |||| |||| ||| ||||||||||||    
T  20639570 ttgtaggcagttgttcgattgtaattttcagaactctcatgttgagttcaataggaggcaagccaatgaggtcactcatgaattagctag 20639659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 155 - 343
Target Start/End: Original strand, 21515101 - 21515287
Alignment:
Q  155 ttttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagacttgtaaataattgatt 254  Q
    ||||| |||||||| |||||||  ||| || || ||| ||||||| ||||  ||||| |||||||||||||||||| |||||  |||||   | ||| |     
T  21515101 ttttgttttggattgcaagtctgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtatttttcaggtttgtaggcagttgttc 21515200  T
Q  255 gcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagcttcatctca 343  Q
    |  |||||||||| ||||||  ||||||||||||||||||  ||||  ||||||||||||| ||||||||||||||||||  |||||||    
T  21515201 gaatgtaattttcagaactc--atgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagccccatctca 21515287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 263 - 334
Target Start/End: Complemental strand, 44839964 - 44839893
Alignment:
Q  263 ttttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagc 334  Q
    ||||| ||||||| ||||||||||||||||||  ||||||||||||||||||| ||| ||||||||||||||    
T  44839964 ttttcagaactctcatgtcgagttcaataggaggcaagttaatggggtcgctcatgagttagctagggtagc 44839893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 263 - 343
Target Start/End: Complemental strand, 2536589 - 2536509
Alignment:
Q  263 ttttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagcttcatctca 343  Q
    ||||| ||||||| ||||||||||||||||||  ||||  ||||||||||||| |||||||| |||||||||  |||||||    
T  2536589 ttttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagttagggtagccccatctca 2536509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 286
Target Start/End: Complemental strand, 32989051 - 32988972
Alignment:
Q  207 gatagtagtgaactaggttgtattattcagacttgtaaataattgattgcttgtaattttctgaactcttatgtcgagtt 286  Q
    ||||| |||||||||||||||||||||||||||||||   | ||| | | |||||| |||| ||||||| ||||||||||    
T  32989051 gatagcagtgaactaggttgtattattcagacttgtaggcagttgttcgattgtaactttcagaactctcatgtcgagtt 32988972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 334
Target Start/End: Complemental strand, 51080772 - 51080708
Alignment:
Q  270 aactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagc 334  Q
    |||||| |||||||||| |||||||  |||  |||||||||||||| ||||||||| ||||||||    
T  51080772 aactctcatgtcgagtttaataggaggcaatctaatggggtcgctcatgaattagcgagggtagc 51080708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 139 - 329
Target Start/End: Original strand, 942573 - 942763
Alignment:
Q  139 attatgatcatgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagac 238  Q
    |||||||  |||||||||||| |||||||| |||||||  ||| || |  ||| | ||||| ||||  |||||||||||||||||||||||||||||| |    
T  942573 attatgacaatgttgattttgttttggattccaagtctgttgttgaacattttaagtcaaacctaggtgatagtagtgaactaggttgtattattcaggc 942672  T
Q  239 ttgtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagg 329  Q
    |||||   | ||| | | ||||||||||| ||||||| ||||||||||||||||||  ||||  |||||||||||||||||||||||||||    
T  942673 ttgtaggcagttgttcgattgtaattttcagaactctaatgtcgagttcaataggaggcaagccaatggggtcgctcgtgaattagctagg 942763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 263 - 343
Target Start/End: Original strand, 4513076 - 4513156
Alignment:
Q  263 ttttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagcttcatctca 343  Q
    ||||| ||||||| ||||||||||||||||||  ||||  ||||||||||||  ||||||||||||||||||  |||||||    
T  4513076 ttttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctaatgaattagctagggtagccccatctca 4513156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 139 - 343
Target Start/End: Original strand, 23820403 - 23820607
Alignment:
Q  139 attatgatcatgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagac 238  Q
    ||||||| |||||| |||||| |||||||| |||||||  ||| |  | |||| ||||||| ||||  ||||||||||||||||||||||| ||||||      
T  23820403 attatgaccatgttaattttgttttggattccaagtctgttgttgtacactttaattcaaacctaggtgatagtagtgaactaggttgtatcattcaggt 23820502  T
Q  239 ttgtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagcttca 338  Q
    |||||   | ||| ||| ||||||||||| ||||||| || |||||||||||||||  ||||  ||||||||||||| |||||||| |||||||| | ||    
T  23820503 ttgtaggcagttgtttgattgtaattttcagaactctcatatcgagttcaataggaggcaagccaatggggtcgctcatgaattagatagggtagatcca 23820602  T
Q  339 tctca 343  Q
    |||||    
T  23820603 tctca 23820607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 141 - 243
Target Start/End: Complemental strand, 24808980 - 24808878
Alignment:
Q  141 tatgatcatgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagactt 240  Q
    ||||| ||||||||||||| ||| |||| |||||||  ||| ||||| ||| ||||||| ||||  |||||||||||||||||||||||||||||| |||    
T  24808980 tatgaccatgttgattttgttttagattccaagtctgttgttgatcgttttaattcaaacctagttgatagtagtgaactaggttgtattattcaggctt 24808881  T
Q  241 gta 243  Q
    |||    
T  24808880 gta 24808878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 193 - 343
Target Start/End: Complemental strand, 41197533 - 41197383
Alignment:
Q  193 attcaaatctagacgatagtagtgaactaggttgtattattcagacttgtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaatag 292  Q
    ||||||| ||||  ||||| ||||||||||||||||||||| || ||| || | | ||| | | ||||||||||| ||||||||||||||||||||||||    
T  41197533 attcaaacctaggtgatagcagtgaactaggttgtattatttaggcttatagacagttgttcgattgtaattttcagaactcttatgtcgagttcaatag 41197434  T
Q  293 gaaacaagttaatggggtcgctcgtgaattagctagggtagcttcatctca 343  Q
    ||  ||||  ||||||||||||| ||||||||||||||||||  |||||||    
T  41197433 gaggcaagccaatggggtcgctcatgaattagctagggtagccccatctca 41197383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 260 - 343
Target Start/End: Complemental strand, 30376537 - 30376454
Alignment:
Q  260 taattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagcttcatctca 343  Q
    ||||||||  |||||||||||||||||||||||||  ||||  ||| ||||||||| ||||||||||| |||||| ||||||||    
T  30376537 taattttcaaaactcttatgtcgagttcaataggaggcaagccaatagggtcgctcatgaattagctacggtagcctcatctca 30376454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 147 - 333
Target Start/End: Complemental strand, 36779623 - 36779439
Alignment:
Q  147 catgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagacttgtaaat 246  Q
    ||||||||||||  |||||||| |||||||| ||| || || ||| ||||||| |||   || |||||||||||||||||||||||| || ||||||       
T  36779623 catgttgattttattttggattccaagtctattgttgaacgttttaattcaaacctaattgagagtagtgaactaggttgtattattaaggcttgtaggc 36779524  T
Q  247 aattgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtag 333  Q
    | ||| ||| ||||||  ||| ||||||| ||||||||| ||||||||  ||||  ||| | ||| ||| || ||||||||||||||    
T  36779523 agttgtttggttgtaa--ttcagaactctcatgtcgagtacaataggaggcaagccaatagtgtcactcatggattagctagggtag 36779439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 139 - 343
Target Start/End: Complemental strand, 43989488 - 43989285
Alignment:
Q  139 attatgatcatgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagac 238  Q
    |||||||  |||||||||||| |||||||| ||||| |  ||| || || ||| ||||||| ||||  ||||| |||||||||||||||||||||||| |    
T  43989488 attatgacaatgttgattttgttttggattgcaagtttgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggc 43989389  T
Q  239 ttgtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagcttca 338  Q
    ||| | | ||||| | | |||| |||||  |||| || ||||||||||||||||||  ||||  |||| |||||||| |||||||| |||||||||  ||    
T  43989388 ttgcagacaattgttcgattgt-atttttagaacgctcatgtcgagttcaataggaggcaagccaatgaggtcgctcatgaattagttagggtagcccca 43989290  T
Q  339 tctca 343  Q
    |||||    
T  43989289 tctca 43989285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 325
Target Start/End: Complemental strand, 19316081 - 19315935
Alignment:
Q  179 tgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagacttgtaaataattgattgcttgtaattttctgaactcttat 278  Q
    |||||||| |||| | |||||| |||| ||||||||||| |||||||| ||||| ||  |||||| ||| ||| ||| |   | ||||| ||||||| ||    
T  19316081 tgtagatcactttaagtcaaatgtagatgatagtagtgagctaggttgcattatacatgcttgtagatagttgtttgttaacagttttcagaactctcat 19315982  T
Q  279 gtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagc 325  Q
    ||||||||||||||||  ||||  ||||| |||| || |||||||||    
T  19315981 gtcgagttcaataggaggcaagccaatggagtcgttcatgaattagc 19315935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 325
Target Start/End: Original strand, 1394129 - 1394191
Alignment:
Q  263 ttttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagc 325  Q
    ||||| ||||||| ||||||||||||||||||  |||| ||||||||||| || |||||||||    
T  1394129 ttttcagaactctcatgtcgagttcaataggaggcaagctaatggggtcgttcatgaattagc 1394191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 343
Target Start/End: Complemental strand, 43813264 - 43813198
Alignment:
Q  277 atgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagcttcatctca 343  Q
    |||||||||||||||| | |||||| |||||||||| || |||||||| |||||||||  |||||||    
T  43813264 atgtcgagttcaatagcagacaagtcaatggggtcgttcatgaattagttagggtagccccatctca 43813198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 315
Target Start/End: Complemental strand, 49407175 - 49407130
Alignment:
Q  270 aactcttatgtcgagttcaataggaaacaagttaatggggtcgctc 315  Q
    |||||||||||| ||||||||||||| ||||| ||| |||||||||    
T  49407175 aactcttatgtcaagttcaataggaagcaagtaaatagggtcgctc 49407130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 9633063 - 9633111
Alignment:
Q  264 tttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcg 312  Q
    |||| ||||||| ||||||||||||||||||  ||||| ||||||||||    
T  9633063 tttcagaactctcatgtcgagttcaataggaggcaagtgaatggggtcg 9633111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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