View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12528_high_20 (Length: 278)

Name: NF12528_high_20
Description: NF12528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12528_high_20
NF12528_high_20
[»] chr7 (16 HSPs)
chr7 (18-152)||(4182564-4182698)
chr7 (215-278)||(21037237-21037300)
chr7 (197-247)||(19426616-19426666)
chr7 (197-247)||(40842441-40842491)
chr7 (197-278)||(5724043-5724124)
chr7 (127-162)||(32171024-32171059)
chr7 (215-278)||(47644710-47644773)
chr7 (197-247)||(2790213-2790263)
chr7 (197-247)||(41254812-41254862)
chr7 (197-247)||(47424970-47425020)
chr7 (197-278)||(17500702-17500783)
chr7 (197-278)||(17552431-17552512)
chr7 (197-278)||(21752663-21752744)
chr7 (127-159)||(10591302-10591334)
chr7 (215-275)||(36186879-36186939)
chr7 (200-244)||(41985088-41985132)
[»] scaffold0060 (1 HSPs)
scaffold0060 (197-278)||(6822-6903)
[»] chr3 (26 HSPs)
chr3 (197-247)||(37303059-37303109)
chr3 (197-247)||(108467-108517)
chr3 (197-247)||(6126490-6126540)
chr3 (197-278)||(33007365-33007446)
chr3 (197-278)||(43900742-43900823)
chr3 (197-278)||(49130859-49130940)
chr3 (197-278)||(52727433-52727514)
chr3 (127-159)||(20893131-20893163)
chr3 (196-244)||(23585154-23585202)
chr3 (196-244)||(23599977-23600025)
chr3 (215-278)||(22153869-22153932)
chr3 (124-159)||(31997953-31997988)
chr3 (196-247)||(39540271-39540322)
chr3 (215-278)||(44334804-44334867)
chr3 (125-159)||(3730955-3730989)
chr3 (197-247)||(14207411-14207461)
chr3 (197-247)||(14215159-14215209)
chr3 (197-247)||(35554100-35554150)
chr3 (197-247)||(37303419-37303469)
chr3 (197-247)||(41877596-41877646)
chr3 (197-247)||(48649616-48649666)
chr3 (197-242)||(30664544-30664589)
chr3 (197-278)||(47988470-47988551)
chr3 (197-278)||(47997757-47997838)
chr3 (197-278)||(48007044-48007125)
chr3 (215-275)||(622463-622523)
[»] chr4 (21 HSPs)
chr4 (197-278)||(17363235-17363316)
chr4 (124-159)||(39241188-39241223)
chr4 (197-275)||(36512850-36512928)
chr4 (197-278)||(9472498-9472579)
chr4 (197-278)||(39881015-39881096)
chr4 (206-278)||(25523192-25523264)
chr4 (198-278)||(40335794-40335874)
chr4 (197-247)||(24772707-24772757)
chr4 (197-247)||(44165945-44165995)
chr4 (197-247)||(46794486-46794536)
chr4 (197-247)||(55927020-55927070)
chr4 (124-162)||(55927131-55927169)
chr4 (197-278)||(51296174-51296255)
chr4 (206-247)||(53583122-53583163)
chr4 (197-278)||(55996427-55996508)
chr4 (196-236)||(23347822-23347862)
chr4 (218-278)||(30866358-30866418)
chr4 (196-244)||(30973625-30973673)
chr4 (200-244)||(39241289-39241333)
chr4 (115-159)||(42915096-42915140)
chr4 (198-242)||(46355279-46355323)
[»] chr1 (27 HSPs)
chr1 (197-278)||(30439255-30439336)
chr1 (188-278)||(33669785-33669875)
chr1 (197-278)||(36690557-36690638)
chr1 (197-278)||(36706658-36706739)
chr1 (197-246)||(52020409-52020458)
chr1 (215-278)||(15059644-15059708)
chr1 (215-278)||(32216007-32216070)
chr1 (188-247)||(15470032-15470091)
chr1 (215-278)||(44112459-44112522)
chr1 (215-278)||(44641906-44641969)
chr1 (215-278)||(49596240-49596303)
chr1 (215-278)||(52369114-52369177)
chr1 (215-278)||(52417536-52417599)
chr1 (197-247)||(28253051-28253101)
chr1 (125-159)||(28716293-28716327)
chr1 (197-247)||(31703463-31703513)
chr1 (197-247)||(39010850-39010900)
chr1 (197-247)||(40610265-40610315)
chr1 (197-247)||(45272145-45272195)
chr1 (197-247)||(48872936-48872986)
chr1 (197-247)||(50141920-50141970)
chr1 (197-278)||(8464498-8464579)
chr1 (125-162)||(8934421-8934458)
chr1 (197-242)||(30414905-30414950)
chr1 (197-278)||(30530384-30530465)
chr1 (197-278)||(37843417-37843498)
chr1 (124-152)||(46903628-46903656)
[»] chr8 (29 HSPs)
chr8 (126-162)||(39719129-39719165)
chr8 (197-247)||(11879475-11879525)
chr8 (197-247)||(11896891-11896941)
chr8 (197-247)||(32174990-32175040)
chr8 (126-159)||(14029130-14029163)
chr8 (197-278)||(21648916-21648997)
chr8 (197-278)||(26871051-26871132)
chr8 (197-278)||(41406841-41406922)
chr8 (127-159)||(21648819-21648851)
chr8 (215-278)||(5642393-5642456)
chr8 (215-278)||(5644334-5644397)
chr8 (123-162)||(23258179-23258218)
chr8 (197-244)||(30925639-30925686)
chr8 (197-247)||(426137-426187)
chr8 (197-247)||(21418577-21418627)
chr8 (197-247)||(34473985-34474035)
chr8 (197-247)||(42047371-42047421)
chr8 (197-247)||(42716356-42716406)
chr8 (197-247)||(45101432-45101482)
chr8 (127-156)||(3650267-3650296)
chr8 (198-247)||(9550393-9550442)
chr8 (197-278)||(14029228-14029309)
chr8 (197-278)||(28473530-28473611)
chr8 (197-278)||(41344654-41344735)
chr8 (179-236)||(44672186-44672243)
chr8 (126-162)||(1370183-1370219)
chr8 (198-278)||(39719234-39719314)
chr8 (215-275)||(40464964-40465024)
chr8 (124-152)||(45405720-45405748)
[»] chr5 (13 HSPs)
chr5 (196-247)||(40223769-40223820)
chr5 (197-247)||(14206425-14206475)
chr5 (197-278)||(27340874-27340955)
chr5 (199-247)||(39458693-39458741)
chr5 (197-244)||(16202759-16202806)
chr5 (196-278)||(6529024-6529106)
chr5 (197-278)||(11880972-11881053)
chr5 (197-247)||(12661932-12661982)
chr5 (197-247)||(34381048-34381098)
chr5 (197-278)||(12401197-12401278)
chr5 (198-242)||(22653696-22653740)
chr5 (127-159)||(24431507-24431539)
chr5 (198-242)||(37821111-37821155)
[»] chr2 (16 HSPs)
chr2 (215-278)||(42665815-42665878)
chr2 (197-247)||(28013992-28014042)
chr2 (197-278)||(41868354-41868436)
chr2 (215-278)||(7497994-7498057)
chr2 (215-278)||(41353500-41353563)
chr2 (197-247)||(1889183-1889233)
chr2 (197-247)||(5455438-5455488)
chr2 (197-247)||(6639457-6639507)
chr2 (197-247)||(7086109-7086159)
chr2 (197-247)||(31635795-31635845)
chr2 (197-247)||(32750034-32750084)
chr2 (126-159)||(2013173-2013206)
chr2 (197-278)||(22390157-22390238)
chr2 (197-278)||(34372852-34372933)
chr2 (127-159)||(28014094-28014126)
chr2 (127-159)||(45693356-45693388)
[»] scaffold0204 (1 HSPs)
scaffold0204 (197-247)||(27375-27425)
[»] chr6 (10 HSPs)
chr6 (197-278)||(19789061-19789142)
chr6 (196-247)||(1196083-1196134)
chr6 (196-247)||(21506372-21506423)
chr6 (197-275)||(30253298-30253376)
chr6 (126-159)||(2163829-2163862)
chr6 (126-159)||(2175462-2175495)
chr6 (197-278)||(23633308-23633389)
chr6 (198-278)||(3821383-3821463)
chr6 (197-277)||(7693321-7693401)
chr6 (127-159)||(30733159-30733191)
[»] scaffold0014 (1 HSPs)
scaffold0014 (215-278)||(199271-199334)
[»] scaffold0054 (1 HSPs)
scaffold0054 (197-247)||(31585-31635)
[»] scaffold0041 (1 HSPs)
scaffold0041 (200-278)||(34413-34491)
[»] scaffold0018 (1 HSPs)
scaffold0018 (200-278)||(36007-36085)
[»] scaffold0002 (1 HSPs)
scaffold0002 (197-247)||(6463-6513)
[»] scaffold0286 (1 HSPs)
scaffold0286 (126-159)||(18547-18580)
[»] scaffold0020 (1 HSPs)
scaffold0020 (197-278)||(155911-155992)
[»] scaffold0174 (1 HSPs)
scaffold0174 (215-278)||(34796-34860)


Alignment Details
Target: chr7 (Bit Score: 119; Significance: 7e-61; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 4182698 - 4182564
Alignment:
Q  18 tatttcaattcaaaaaattaaattaagatgcaaaattttaagaccgtaaacatcgtatacaatacaaagtgtgtttgcattttgaagacagggacaatat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  4182698 tatttcaattcaaaaaattaaattaagatgcaaaattttaagaccgtaaacatcgtatataatacaaagtgtgtttgcattttaaagacagggacaatat 4182599  T
Q  118 taatataaagagtagtgatattttaacaaccattt 152  Q
    ||||||||| |||| ||||||||||||||||||||    
T  4182598 taatataaaaagtaatgatattttaacaaccattt 4182564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 215 - 278
Target Start/End: Original strand, 21037237 - 21037300
Alignment:
Q  215 ataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    ||||||||||||| |||||||| ||||||||||  || | | ||||||||||||||||||||||    
T  21037237 ataatgtgagtataagagagaaagttgtcaaaaagttgttagaaattaattgtacaaatatcat 21037300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 19426666 - 19426616
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    |||||||| |||||| ||||||||||||||| |||||||| ||||||||||    
T  19426666 aagagagagaataagaggataatgtgagtatgagagagaaagttgtcaaaa 19426616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 40842491 - 40842441
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    |||||||| |||||| ||||||||||||||| |||||||| ||||||||||    
T  40842491 aagagagagaataagaggataatgtgagtatgagagagaaagttgtcaaaa 40842441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 278
Target Start/End: Complemental strand, 5724124 - 5724043
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    |||||||||||||||   ||||||||||||| |||||||| ||||| ||||  || ||||||| |  |||||||||||||||    
T  5724124 aagagagaaaataagaatataatgtgagtatgagagagaaagttgttaaaaagttgtaataaagtggttgtacaaatatcat 5724043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 162
Target Start/End: Original strand, 32171024 - 32171059
Alignment:
Q  127 gagtagtgatattttaacaaccatttgagacaattt 162  Q
    |||||||||||||| |||||||||||||||||||||    
T  32171024 gagtagtgatatttgaacaaccatttgagacaattt 32171059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 278
Target Start/End: Complemental strand, 47644773 - 47644710
Alignment:
Q  215 ataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    ||||||||||||| |||||||| ||||||||||  || ||||||| |  |||||||||||||||    
T  47644773 ataatgtgagtatgagagagaaagttgtcaaaaaattataataaagtggttgtacaaatatcat 47644710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 2790263 - 2790213
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    |||||||| |||||| | ||||||||||||| |||||||| ||||||||||    
T  2790263 aagagagagaataagagtataatgtgagtatgagagagaaagttgtcaaaa 2790213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 41254862 - 41254812
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    |||||||| |||||| | ||||||||||||| |||||||| ||||||||||    
T  41254862 aagagagagaataagagtataatgtgagtatgagagagaaagttgtcaaaa 41254812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 47424970 - 47425020
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    |||||||| |||||| ||||||||||||||| ||||||||  |||||||||    
T  47424970 aagagagataataagaggataatgtgagtatgagagagaaaattgtcaaaa 47425020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 278
Target Start/End: Complemental strand, 17500783 - 17500702
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    |||||||| ||||||   ||||||||||||| ||||| || ||||||||||  || ||||||| |  |||||||||||||||    
T  17500783 aagagagagaataagaatataatgtgagtatgagagataaagttgtcaaaaagttataataaagtggttgtacaaatatcat 17500702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 17552431 - 17552512
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    |||||||| ||||||   ||||||||||||| ||||| || ||||||||||  || ||||||| |  |||||||||||||||    
T  17552431 aagagagagaataagaatataatgtgagtatgagagataaagttgtcaaaaagttataataaagtggttgtacaaatatcat 17552512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 278
Target Start/End: Complemental strand, 21752744 - 21752663
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    |||||||| |||||| | ||||||||||||| ||||| || ||||||||||  || | | ||| | ||||||||||||||||    
T  21752744 aagagagagaataagagaataatgtgagtatgagagataaagttgtcaaaaagttgtgagaaagtgattgtacaaatatcat 21752663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 159
Target Start/End: Complemental strand, 10591334 - 10591302
Alignment:
Q  127 gagtagtgatattttaacaaccatttgagacaa 159  Q
    |||||||||||||| ||||||||||||||||||    
T  10591334 gagtagtgatatttgaacaaccatttgagacaa 10591302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 36186879 - 36186939
Alignment:
Q  215 ataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatat 275  Q
    ||||||||||||| |||||||| ||||||||||  ||| |||||| |  ||||||||||||    
T  36186879 ataatgtgagtatgagagagaaagttgtcaaaaaatttaaataaagtggttgtacaaatat 36186939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 244
Target Start/End: Original strand, 41985088 - 41985132
Alignment:
Q  200 agagaaaataagtggataatgtgagtatcagagagaacgttgtca 244  Q
    |||||||||||| | ||||||||||||| |||||||| |||||||    
T  41985088 agagaaaataagagaataatgtgagtatgagagagaaagttgtca 41985132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 197 - 278
Target Start/End: Complemental strand, 6903 - 6822
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    |||||||| |||||| ||||||||||||||| |||||||| ||||||||||  || | ||||||| ||||| ||||||||||    
T  6903 aagagagagaataagaggataatgtgagtatgagagagaaagttgtcaaaaagttgtcataaattgattgtccaaatatcat 6822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 37303059 - 37303109
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    ||||||||||||||| ||||||||||||||| |||||||| ||||||||||    
T  37303059 aagagagaaaataagaggataatgtgagtatgagagagaaagttgtcaaaa 37303109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 108517 - 108467
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    |||||||| |||||| ||||||||||||||| |||||||| ||||||||||    
T  108517 aagagagagaataagaggataatgtgagtatgagagagaaagttgtcaaaa 108467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 6126540 - 6126490
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    |||||||| |||||| ||||||||||||||| |||||||| ||||||||||    
T  6126540 aagagagagaataagaggataatgtgagtatgagagagaaagttgtcaaaa 6126490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 278
Target Start/End: Complemental strand, 33007446 - 33007365
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    |||||||| |||||| | ||||||||||||| ||||||||  |||||||||  || | | ||||| ||||||||||||||||    
T  33007446 aagagagagaataagagaataatgtgagtatgagagagaaaattgtcaaaaagttgtgagaaattgattgtacaaatatcat 33007365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 43900742 - 43900823
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    |||||||| ||||||   ||||||||||||| |||||||| ||||||||||  || ||||||| |  |||||||||||||||    
T  43900742 aagagagagaataagaatataatgtgagtatgagagagaaagttgtcaaaaagttgtaataaagtggttgtacaaatatcat 43900823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 278
Target Start/End: Complemental strand, 49130940 - 49130859
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    |||||||| |||||| | ||||||||||||| | |||||| ||||||||||  || | ||||| ||| ||||||||||||||    
T  49130940 aagagagagaataagagtataatgtgagtatgaaagagaaggttgtcaaaaaattgtcataaaataaatgtacaaatatcat 49130859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 52727433 - 52727514
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    |||||||| |||||| | |||||||||||||  ||||||| ||||||||||  || | ||||| | ||||||||||||||||    
T  52727433 aagagagagaataagagtataatgtgagtatgtgagagaaagttgtcaaaaaattatcataaagtgattgtacaaatatcat 52727514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 159
Target Start/End: Original strand, 20893131 - 20893163
Alignment:
Q  127 gagtagtgatattttaacaaccatttgagacaa 159  Q
    |||||||||||||||||||||||||||||||||    
T  20893131 gagtagtgatattttaacaaccatttgagacaa 20893163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 23585202 - 23585154
Alignment:
Q  196 aaagagagaaaataagtggataatgtgagtatcagagagaacgttgtca 244  Q
    |||||||||||||||| | ||||||||||||| |||||||| |||||||    
T  23585202 aaagagagaaaataagagaataatgtgagtatgagagagaaagttgtca 23585154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 23600025 - 23599977
Alignment:
Q  196 aaagagagaaaataagtggataatgtgagtatcagagagaacgttgtca 244  Q
    |||||||||||||||| | ||||||||||||| |||||||| |||||||    
T  23600025 aaagagagaaaataagagaataatgtgagtatgagagagaaagttgtca 23599977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 278
Target Start/End: Complemental strand, 22153932 - 22153869
Alignment:
Q  215 ataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    ||||||||||||| |||||||| ||||||||||   | ||||||| | ||||||||||||||||    
T  22153932 ataatgtgagtatgagagagaaagttgtcaaaaagctgtaataaagtgattgtacaaatatcat 22153869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 159
Target Start/End: Complemental strand, 31997988 - 31997953
Alignment:
Q  124 aaagagtagtgatattttaacaaccatttgagacaa 159  Q
    ||||||||||||||||| ||||||||||||||||||    
T  31997988 aaagagtagtgatatttgaacaaccatttgagacaa 31997953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 247
Target Start/End: Complemental strand, 39540322 - 39540271
Alignment:
Q  196 aaagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    |||||||||||||||| | ||||||||||||| ||||||||  |||||||||    
T  39540322 aaagagagaaaataagagaataatgtgagtatgagagagaaaattgtcaaaa 39540271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 278
Target Start/End: Original strand, 44334804 - 44334867
Alignment:
Q  215 ataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    ||||||||||||| |||||||| ||||||||||  || ||||||| |  |||||||||||||||    
T  44334804 ataatgtgagtatgagagagaaagttgtcaaaaagttgtaataaagtggttgtacaaatatcat 44334867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 159
Target Start/End: Original strand, 3730955 - 3730989
Alignment:
Q  125 aagagtagtgatattttaacaaccatttgagacaa 159  Q
    |||||||||||||||||||| ||||||||||||||    
T  3730955 aagagtagtgatattttaacgaccatttgagacaa 3730989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 14207461 - 14207411
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    |||||||| |||||| | ||||||||||||| |||||||| ||||||||||    
T  14207461 aagagagagaataagagtataatgtgagtatgagagagaaagttgtcaaaa 14207411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 14215209 - 14215159
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    |||||||| |||||| | ||||||||||||| |||||||| ||||||||||    
T  14215209 aagagagagaataagagtataatgtgagtatgagagagaaagttgtcaaaa 14215159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 35554100 - 35554150
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    ||||| || |||||| ||||||||||||||| |||||||| ||||||||||    
T  35554100 aagagggagaataagaggataatgtgagtatgagagagaaagttgtcaaaa 35554150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 37303469 - 37303419
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    ||||| || |||||| ||||||||||||||| |||||||| ||||||||||    
T  37303469 aagagggagaataagaggataatgtgagtatgagagagaaagttgtcaaaa 37303419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 41877596 - 41877646
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    ||||||||||||||| | ||||||||||||| ||||| || ||||||||||    
T  41877596 aagagagaaaataagagtataatgtgagtatgagagaaaaagttgtcaaaa 41877646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 48649666 - 48649616
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    ||||| || |||||| ||||||||||||||| |||||||| ||||||||||    
T  48649666 aagagggagaataagaggataatgtgagtatgagagagaaagttgtcaaaa 48649616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 30664589 - 30664544
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgt 242  Q
    |||||||||||||||  |||||||||||||| |||||||| |||||    
T  30664589 aagagagaaaataagaagataatgtgagtatgagagagaaagttgt 30664544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 47988470 - 47988551
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    ||||| || ||||||  |||||||||||||| |||||||| ||||||||||  || | | ||| || |||||||||||||||    
T  47988470 aagagggagaataagaagataatgtgagtatgagagagaaagttgtcaaaaagttgttagaaaatagttgtacaaatatcat 47988551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 47997757 - 47997838
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    ||||| || ||||||  |||||||||||||| |||||||| ||||||||||  || | | ||| || |||||||||||||||    
T  47997757 aagagggagaataagaagataatgtgagtatgagagagaaagttgtcaaaaagttgttagaaaatagttgtacaaatatcat 47997838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 48007044 - 48007125
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    ||||| || ||||||  |||||||||||||| |||||||| ||||||||||  || | | ||| || |||||||||||||||    
T  48007044 aagagggagaataagaagataatgtgagtatgagagagaaagttgtcaaaaagttgttagaaaatagttgtacaaatatcat 48007125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 622463 - 622523
Alignment:
Q  215 ataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatat 275  Q
    ||||||||||||| |||||||| ||||||||||  || ||||||| |  ||||||||||||    
T  622463 ataatgtgagtatgagagagaaagttgtcaaaaagttgtaataaaatggttgtacaaatat 622523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 278
Target Start/End: Complemental strand, 17363316 - 17363235
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    |||||||| ||||||   ||||||||||||| |||||||| ||||||||||  || ||||||| | ||||||||||||||||    
T  17363316 aagagagagaataagaatataatgtgagtatgagagagaaagttgtcaaaaagttgtaataaagtgattgtacaaatatcat 17363235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 159
Target Start/End: Original strand, 39241188 - 39241223
Alignment:
Q  124 aaagagtagtgatattttaacaaccatttgagacaa 159  Q
    ||||||||||||||||||||||||||||||||||||    
T  39241188 aaagagtagtgatattttaacaaccatttgagacaa 39241223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 275
Target Start/End: Complemental strand, 36512928 - 36512850
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatat 275  Q
    |||||||| |||||| | ||||||||||||| |||||||| ||||||||||  || | ||||| ||| |||||||||||    
T  36512928 aagagagagaataagagtataatgtgagtatgagagagaaggttgtcaaaaagttgttataaaataaatgtacaaatat 36512850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 9472498 - 9472579
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    |||||||| ||||||  |||||||||||||| |||||||| ||||||||||  || | | ||| || |||||||||||||||    
T  9472498 aagagagagaataagaagataatgtgagtatgagagagaaagttgtcaaaaaattattagaaaatagttgtacaaatatcat 9472579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 39881015 - 39881096
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    |||||||| ||||||  |||||||||||||| |||||||| ||||||||||  || | | ||| | ||||||||||||||||    
T  39881015 aagagagagaataagaagataatgtgagtatgagagagaaagttgtcaaaaagttgttagaaaatgattgtacaaatatcat 39881096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 278
Target Start/End: Original strand, 25523192 - 25523264
Alignment:
Q  206 aataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    |||||| ||||||||||||||| |||||||| ||||||||||  || | | ||| || |||||||||||||||    
T  25523192 aataagaggataatgtgagtatgagagagaaagttgtcaaaaagttgtgagaaaatagttgtacaaatatcat 25523264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 278
Target Start/End: Complemental strand, 40335874 - 40335794
Alignment:
Q  198 agagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    ||||||| ||||||   |||||||||| || |||||||| ||||||||||  || ||||||| | ||||||||||||||||    
T  40335874 agagagataataagaaaataatgtgagcatgagagagaaagttgtcaaaaaattgtaataaaatgattgtacaaatatcat 40335794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 24772757 - 24772707
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    |||||||| |||||| | ||||||||||||| |||||||| ||||||||||    
T  24772757 aagagagagaataagagtataatgtgagtatgagagagaaggttgtcaaaa 24772707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 44165995 - 44165945
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    |||||||| |||||| | ||||||||||||| |||||||| ||||||||||    
T  44165995 aagagagagaataagagaataatgtgagtatgagagagaaagttgtcaaaa 44165945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 46794486 - 46794536
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    |||||||| |||||| | ||||||||||||| |||||||| ||||||||||    
T  46794486 aagagagagaataagagtataatgtgagtatgagagagaaagttgtcaaaa 46794536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 55927070 - 55927020
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    |||||||| |||||| | ||||||||||||| |||||||| ||||||||||    
T  55927070 aagagagagaataagagtataatgtgagtatgagagagaaggttgtcaaaa 55927020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 162
Target Start/End: Complemental strand, 55927169 - 55927131
Alignment:
Q  124 aaagagtagtgatattttaacaaccatttgagacaattt 162  Q
    ||||||||||||||||| |||| ||||||||||||||||    
T  55927169 aaagagtagtgatatttgaacatccatttgagacaattt 55927131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 51296174 - 51296255
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    |||||||  |||||| | |||||||||||||  ||||||| ||||||||||  || | ||||| | ||||||||||||||||    
T  51296174 aagagagggaataagagtataatgtgagtatgtgagagaaagttgtcaaaaagttgtcataaagtgattgtacaaatatcat 51296255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 247
Target Start/End: Original strand, 53583122 - 53583163
Alignment:
Q  206 aataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    |||||| ||||||||||||||| |||||||| ||||||||||    
T  53583122 aataagaggataatgtgagtatgagagagaaagttgtcaaaa 53583163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 278
Target Start/End: Complemental strand, 55996508 - 55996427
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    |||||||| ||||||  |||||||||||||| ||||||||  |||||||||  || | | ||| | ||||||||||||||||    
T  55996508 aagagagagaataagaagataatgtgagtatgagagagaaaattgtcaaaaaattgttagaaaatgattgtacaaatatcat 55996427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 23347862 - 23347822
Alignment:
Q  196 aaagagagaaaataagtggataatgtgagtatcagagagaa 236  Q
    ||||||||| |||||| ||||||||||||||| ||||||||    
T  23347862 aaagagagagaataagaggataatgtgagtatgagagagaa 23347822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 30866418 - 30866358
Alignment:
Q  218 atgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    |||||||||| | |||||| |||||||||| ||| | ||||| | ||||||||||||||||    
T  30866418 atgtgagtatgaaagagaaagttgtcaaaaatttatcataaaatgattgtacaaatatcat 30866358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 30973673 - 30973625
Alignment:
Q  196 aaagagagaaaataagtggataatgtgagtatcagagagaacgttgtca 244  Q
    |||||||||||||||| ||||||||||||||| | ||| || |||||||    
T  30973673 aaagagagaaaataagaggataatgtgagtatgaaagaaaaagttgtca 30973625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 244
Target Start/End: Original strand, 39241289 - 39241333
Alignment:
Q  200 agagaaaataagtggataatgtgagtatcagagagaacgttgtca 244  Q
    ||||| |||||| ||||||||||||||| |||||||| |||||||    
T  39241289 agagagaataagaggataatgtgagtatgagagagaaagttgtca 39241333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 42915096 - 42915140
Alignment:
Q  115 tattaatataaagagtagtgatattttaacaaccatttgagacaa 159  Q
    |||||||| ||||||||||||||||| |||||| |||||| ||||    
T  42915096 tattaataaaaagagtagtgatatttgaacaactatttgatacaa 42915140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 46355279 - 46355323
Alignment:
Q  198 agagagaaaataagtggataatgtgagtatcagagagaacgttgt 242  Q
    ||||||| ||||||| |||||||||||||| |||||||| |||||    
T  46355279 agagagagaataagtagataatgtgagtatgagagagaatgttgt 46355323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 278
Target Start/End: Complemental strand, 30439336 - 30439255
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    ||||||||||||||  ||||||||||||||| ||||| || ||||||||||  || | |||||||  |||||||||||||||    
T  30439336 aagagagaaaataaaaggataatgtgagtatgagagataaagttgtcaaaaaattgtcataaattggttgtacaaatatcat 30439255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 278
Target Start/End: Original strand, 33669785 - 33669875
Alignment:
Q  188 aaaacattaaagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    |||||| |||||||||||||||||   ||||||||||||| ||||| || ||||||||||  || ||||||| | |||| |||| ||||||    
T  33669785 aaaacaataaagagagaaaataagaatataatgtgagtatgagagaaaaagttgtcaaaaaattgtaataaaatgattgcacaattatcat 33669875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 36690557 - 36690638
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    ||||| || |||||| ||||||||||||||| |||||||| ||||||||||  || | | |||||  |||||||||||||||    
T  36690557 aagagggataataagaggataatgtgagtatgagagagaaagttgtcaaaaaattgtgagaaattggttgtacaaatatcat 36690638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 36706658 - 36706739
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    ||||| || |||||| ||||||||||||||| |||||||| ||||||||||  || | | |||||  |||||||||||||||    
T  36706658 aagagggataataagaggataatgtgagtatgagagagaaagttgtcaaaaaattgtgagaaattggttgtacaaatatcat 36706739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 52020409 - 52020458
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaa 246  Q
    |||||||| |||||| ||||||||||||||| |||||||| |||||||||    
T  52020409 aagagagagaataagaggataatgtgagtatgagagagaaagttgtcaaa 52020458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 278
Target Start/End: Complemental strand, 15059708 - 15059644
Alignment:
Q  215 ataatgtgagtatcagagagaacgttgtc-aaaattttttaataaattaattgtacaaatatcat 278  Q
    ||||||||||||| |||||||| |||||| |||||||| ||||||| |  |||||||||||||||    
T  15059708 ataatgtgagtatgagagagaaagttgtcaaaaattttgtaataaaatggttgtacaaatatcat 15059644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 278
Target Start/End: Complemental strand, 32216070 - 32216007
Alignment:
Q  215 ataatgtgagtatcagagagaacgttgtc-aaaattttttaataaattaattgtacaaatatcat 278  Q
    ||||||||||||| |||||||| |||||| ||||||| |||| |||||| |||||||||||||||    
T  32216070 ataatgtgagtatgagagagaaagttgtctaaaatttattaaaaaatta-ttgtacaaatatcat 32216007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 15470032 - 15470091
Alignment:
Q  188 aaaacattaaagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    |||||| || |||||||||||||   |||||||||||||| |||||||| ||||||||||    
T  15470032 aaaacaatagagagagaaaataaaaagataatgtgagtatgagagagaaagttgtcaaaa 15470091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 278
Target Start/End: Complemental strand, 44112522 - 44112459
Alignment:
Q  215 ataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    ||||||||||||| |||||||| ||||||||||  || ||||||| |  |||||||||||||||    
T  44112522 ataatgtgagtatgagagagaaagttgtcaaaaaattgtaataaagtggttgtacaaatatcat 44112459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 278
Target Start/End: Original strand, 44641906 - 44641969
Alignment:
Q  215 ataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    ||||||||||||| |||||||| ||||||||||  || ||||||| |  |||||||||||||||    
T  44641906 ataatgtgagtatgagagagaaagttgtcaaaaaattgtaataaagtggttgtacaaatatcat 44641969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 278
Target Start/End: Complemental strand, 49596303 - 49596240
Alignment:
Q  215 ataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    ||||||||||||| |||||||| ||||||||||  || ||||||| |  |||||||||||||||    
T  49596303 ataatgtgagtatgagagagaaagttgtcaaaaaattgtaataaaatggttgtacaaatatcat 49596240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 278
Target Start/End: Original strand, 52369114 - 52369177
Alignment:
Q  215 ataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    ||||||||||||| ||||| || ||||||||||  || ||||||| || |||||||||||||||    
T  52369114 ataatgtgagtattagagaaaaagttgtcaaaaagttataataaagtagttgtacaaatatcat 52369177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 278
Target Start/End: Complemental strand, 52417599 - 52417536
Alignment:
Q  215 ataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    ||||||||||||| |||||||| ||||||||||  || ||||||| || |||| ||||||||||    
T  52417599 ataatgtgagtatgagagagaaagttgtcaaaaagttgtaataaagtagttgtccaaatatcat 52417536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 28253101 - 28253051
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    |||||||| |||||| ||||||||||||||| ||||||||  |||||||||    
T  28253101 aagagagagaataagaggataatgtgagtatgagagagaaaattgtcaaaa 28253051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 159
Target Start/End: Complemental strand, 28716327 - 28716293
Alignment:
Q  125 aagagtagtgatattttaacaaccatttgagacaa 159  Q
    |||||||||||||||| ||||||||||||||||||    
T  28716327 aagagtagtgatatttgaacaaccatttgagacaa 28716293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 31703463 - 31703513
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    |||||||| |||||| ||||||||||||||| |||||||| ||||| ||||    
T  31703463 aagagagagaataagaggataatgtgagtatgagagagaaagttgttaaaa 31703513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 39010900 - 39010850
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    ||||| || |||||| ||||||||||||||| |||||||| ||||||||||    
T  39010900 aagagggagaataagaggataatgtgagtatgagagagaaagttgtcaaaa 39010850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 40610315 - 40610265
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    |||||||| |||||| | ||||||||||||| |||||||| ||||||||||    
T  40610315 aagagagagaataagagtataatgtgagtatgagagagaaggttgtcaaaa 40610265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 45272145 - 45272195
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    |||||||| |||||  ||||||||||||||| |||||||| ||||||||||    
T  45272145 aagagagagaataaaaggataatgtgagtatgagagagaaagttgtcaaaa 45272195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 48872936 - 48872986
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    |||||||| |||||| ||||||||||||||| |||||||| ||| ||||||    
T  48872936 aagagagagaataagaggataatgtgagtatgagagagaaagttctcaaaa 48872986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 50141920 - 50141970
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    |||||||| |||||| | ||||||||||||| |||||||| ||||||||||    
T  50141920 aagagagagaataagagaataatgtgagtatgagagagaaagttgtcaaaa 50141970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 8464498 - 8464579
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    |||||||| ||||||   ||||||||||||| ||||||||  |||||||||  || ||||||| |  |||||||||||||||    
T  8464498 aagagagagaataagaatataatgtgagtatgagagagaaaattgtcaaaaagttgtaataaagtggttgtacaaatatcat 8464579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 162
Target Start/End: Original strand, 8934421 - 8934458
Alignment:
Q  125 aagagtagtgatattttaacaaccatttgagacaattt 162  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  8934421 aagagtagtgatatttgaacaaccatttgtgacaattt 8934458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 30414950 - 30414905
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgt 242  Q
    |||||||||||||||  |||||||||||||| |||||||| |||||    
T  30414950 aagagagaaaataagaagataatgtgagtatgagagagaaggttgt 30414905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 30530384 - 30530465
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    |||||||| ||||||   ||||||||||||| |||||||| ||||| ||||  || ||||||| |  |||||||||||||||    
T  30530384 aagagagataataagaatataatgtgagtatgagagagaaagttgttaaaaagttgtaataaagtggttgtacaaatatcat 30530465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 37843417 - 37843498
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    |||||||| |||||| | ||||||||||||| |||||||| ||||||| ||  || | | ||| || |||||||||||||||    
T  37843417 aagagagataataagagtataatgtgagtatgagagagaaagttgtcacaaagttgtcaaaaagtagttgtacaaatatcat 37843498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 152
Target Start/End: Complemental strand, 46903656 - 46903628
Alignment:
Q  124 aaagagtagtgatattttaacaaccattt 152  Q
    |||||||||||||||||||||||||||||    
T  46903656 aaagagtagtgatattttaacaaccattt 46903628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 162
Target Start/End: Original strand, 39719129 - 39719165
Alignment:
Q  126 agagtagtgatattttaacaaccatttgagacaattt 162  Q
    |||||||||||||||||||||||||||||||||||||    
T  39719129 agagtagtgatattttaacaaccatttgagacaattt 39719165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 11879475 - 11879525
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    |||||||| |||||| ||||||||||||||| |||||||| ||||||||||    
T  11879475 aagagagagaataagaggataatgtgagtatgagagagaaagttgtcaaaa 11879525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 11896891 - 11896941
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    |||||||| |||||| ||||||||||||||| |||||||| ||||||||||    
T  11896891 aagagagagaataagaggataatgtgagtatgagagagaaagttgtcaaaa 11896941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 32175040 - 32174990
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    |||||||| |||||| ||||||||||||||| |||||||| ||||||||||    
T  32175040 aagagagagaataagaggataatgtgagtatgagagagaaagttgtcaaaa 32174990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 159
Target Start/End: Original strand, 14029130 - 14029163
Alignment:
Q  126 agagtagtgatattttaacaaccatttgagacaa 159  Q
    ||||||||||||||||||||||||||||||||||    
T  14029130 agagtagtgatattttaacaaccatttgagacaa 14029163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 21648916 - 21648997
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    |||||||| |||||| ||||||||||||||| |||||||| ||||| ||||  || | | |||||  |||||||||||||||    
T  21648916 aagagagagaataagaggataatgtgagtatgagagagaaagttgttaaaaagttgtcacaaattggttgtacaaatatcat 21648997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 278
Target Start/End: Complemental strand, 26871132 - 26871051
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    |||||||| |||||| | |||||||||| || |||||||| ||||||||||  || | ||||| | ||||||||||||||||    
T  26871132 aagagagataataagagtataatgtgagaatgagagagaatgttgtcaaaaagttgtcataaagtgattgtacaaatatcat 26871051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 41406841 - 41406922
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    |||||||| |||||| ||||||||||||||| |||||||| ||||| ||||  || | | ||| | ||||||||||||||||    
T  41406841 aagagagagaataagaggataatgtgagtatgagagagaaagttgttaaaaaattgtcaaaaaatgattgtacaaatatcat 41406922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 159
Target Start/End: Original strand, 21648819 - 21648851
Alignment:
Q  127 gagtagtgatattttaacaaccatttgagacaa 159  Q
    |||||||||||||||||||||||||||||||||    
T  21648819 gagtagtgatattttaacaaccatttgagacaa 21648851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 278
Target Start/End: Original strand, 5642393 - 5642456
Alignment:
Q  215 ataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    ||||||||||||| |||||||| ||||||||||  |||||||||| |  |||| ||||||||||    
T  5642393 ataatgtgagtatgagagagaaagttgtcaaaaagttttaataaagtggttgtccaaatatcat 5642456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 278
Target Start/End: Original strand, 5644334 - 5644397
Alignment:
Q  215 ataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    ||||||||||||| |||||||| ||||||||||  |||||||||| |  |||| ||||||||||    
T  5644334 ataatgtgagtatgagagagaaagttgtcaaaaagttttaataaagtggttgtccaaatatcat 5644397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 162
Target Start/End: Complemental strand, 23258218 - 23258179
Alignment:
Q  123 taaagagtagtgatattttaacaaccatttgagacaattt 162  Q
    |||||||||||||||||| ||||||||||||| |||||||    
T  23258218 taaagagtagtgatatttgaacaaccatttgaaacaattt 23258179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 244
Target Start/End: Original strand, 30925639 - 30925686
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtca 244  Q
    ||||||||||||||| ||||||||||| ||| |||||||| |||||||    
T  30925639 aagagagaaaataagaggataatgtgaatatgagagagaaagttgtca 30925686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 426187 - 426137
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    |||||||| |||||| | ||||||||||||| |||||||| ||||||||||    
T  426187 aagagagagaataagagtataatgtgagtatgagagagaaagttgtcaaaa 426137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 21418577 - 21418627
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    |||||||| |||||| | ||||||||||||| |||||||| ||||||||||    
T  21418577 aagagagagaataagagtataatgtgagtatgagagagaaagttgtcaaaa 21418627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 34474035 - 34473985
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    |||||||| |||||| ||||||||||||||| ||||||||  |||||||||    
T  34474035 aagagagagaataagaggataatgtgagtatgagagagaaaattgtcaaaa 34473985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 42047421 - 42047371
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    ||||||||||||||| | ||||||||||||| ||||||||  |||||||||    
T  42047421 aagagagaaaataagagtataatgtgagtatgagagagaaaattgtcaaaa 42047371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 42716406 - 42716356
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    |||||||| ||||||  |||||||||||||| |||||||| ||||||||||    
T  42716406 aagagagagaataagaagataatgtgagtatgagagagaaagttgtcaaaa 42716356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 45101482 - 45101432
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    |||||||  |||||| ||||||||||||||| |||||||| ||||||||||    
T  45101482 aagagagggaataagaggataatgtgagtatgagagagaaagttgtcaaaa 45101432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 156
Target Start/End: Complemental strand, 3650296 - 3650267
Alignment:
Q  127 gagtagtgatattttaacaaccatttgaga 156  Q
    ||||||||||||||||||||||||||||||    
T  3650296 gagtagtgatattttaacaaccatttgaga 3650267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 247
Target Start/End: Original strand, 9550393 - 9550442
Alignment:
Q  198 agagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    ||||||| ||||||  |||||||||||||| |||||||| ||||||||||    
T  9550393 agagagagaataagaagataatgtgagtatgagagagaaagttgtcaaaa 9550442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 14029228 - 14029309
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    |||||||| |||||| ||||||||||||||  ||||||||  |||||||||  || | | ||||| ||| ||||||||||||    
T  14029228 aagagagataataagaggataatgtgagtaaaagagagaaaattgtcaaaaaattatcacaaattgattatacaaatatcat 14029309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 28473530 - 28473611
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    |||||||| |||||| | ||||||||||||| |||||||| ||| ||||||| || ||  ||| |  |||||||||||||||    
T  28473530 aagagagagaataagagtataatgtgagtatgagagagaaagttatcaaaatattgtacaaaagtggttgtacaaatatcat 28473611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 41344654 - 41344735
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    |||||||| |||||| | ||||| ||||||| |||||||| ||||||||||  || | | ||| | ||||||||||||||||    
T  41344654 aagagagagaataagagtataatatgagtatgagagagaaggttgtcaaaaagttatcacaaactgattgtacaaatatcat 41344735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 236
Target Start/End: Original strand, 44672186 - 44672243
Alignment:
Q  179 cattgattaaaaacattaaagagagaaaataagtggataatgtgagtatcagagagaa 236  Q
    ||||| ||||||||| |  |||||||||||||| | ||||||||||||| ||||||||    
T  44672186 cattggttaaaaacaatggagagagaaaataagagtataatgtgagtatgagagagaa 44672243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 162
Target Start/End: Original strand, 1370183 - 1370219
Alignment:
Q  126 agagtagtgatattttaacaaccatttgagacaattt 162  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  1370183 agagtagtgatatttgaacatccatttgagacaattt 1370219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 278
Target Start/End: Original strand, 39719234 - 39719314
Alignment:
Q  198 agagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    ||||||| |||||| ||||||||| | ||||||||| || ||| ||||||  || | | ||||| ||||||||||||||||    
T  39719234 agagagagaataagaggataatgtaactatcagagaaaaagttatcaaaaagttgtcacaaattgattgtacaaatatcat 39719314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 40465024 - 40464964
Alignment:
Q  215 ataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatat 275  Q
    ||||||||||||| |||||||| |||||||||| ||| | ||||| || ||||| ||||||    
T  40465024 ataatgtgagtatgagagagaaagttgtcaaaaatttatcataaagtagttgtataaatat 40464964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 152
Target Start/End: Original strand, 45405720 - 45405748
Alignment:
Q  124 aaagagtagtgatattttaacaaccattt 152  Q
    |||||||||||||||||||||||||||||    
T  45405720 aaagagtagtgatattttaacaaccattt 45405748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 247
Target Start/End: Original strand, 40223769 - 40223820
Alignment:
Q  196 aaagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    ||||||||| |||||| ||||||||||||||| |||||||| ||||||||||    
T  40223769 aaagagagagaataagaggataatgtgagtatgagagagaaagttgtcaaaa 40223820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 14206475 - 14206425
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    |||||||| |||||| ||||||||||||||| |||||||| ||||||||||    
T  14206475 aagagagataataagaggataatgtgagtatgagagagaaagttgtcaaaa 14206425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 278
Target Start/End: Complemental strand, 27340955 - 27340874
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    |||||||| ||||||   ||||||||||||| ||||||||  |||||||||  || ||||||| | ||||||||||||||||    
T  27340955 aagagagagaataagaatataatgtgagtatgagagagaaaattgtcaaaaaattataataaagtgattgtacaaatatcat 27340874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 39458741 - 39458693
Alignment:
Q  199 gagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    |||||| |||||| ||||||||||||||| |||||||| ||||||||||    
T  39458741 gagagagaataagaggataatgtgagtatgagagagaaagttgtcaaaa 39458693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 244
Target Start/End: Complemental strand, 16202806 - 16202759
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtca 244  Q
    |||||||| |||||| ||||||||||||||| |||||||| |||||||    
T  16202806 aagagagagaataagaggataatgtgagtatgagagagaaagttgtca 16202759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 278
Target Start/End: Complemental strand, 6529106 - 6529024
Alignment:
Q  196 aaagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    ||||||||| |||||| | |||| |||||||| ||||| || ||||||||||  || | | ||| ||||||||||||||||||    
T  6529106 aaagagagagaataagagtataacgtgagtatgagagaaaaagttgtcaaaaaattgttagaaaataattgtacaaatatcat 6529024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 11880972 - 11881053
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtc-aaaattttttaataaattaattgtacaaatatcat 278  Q
    |||||||| | ||||  |||||||||||||| |||||||| |||||| |||| || |||| ||| ||||||||||||||||||    
T  11880972 aagagagagagtaagaagataatgtgagtatgagagagaaagttgtctaaaagttgttaa-aaaataattgtacaaatatcat 11881053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 12661932 - 12661982
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    |||||||| |||||  ||||||||||||||| |||||||| ||||||||||    
T  12661932 aagagagagaataaaaggataatgtgagtatgagagagaaagttgtcaaaa 12661982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 34381098 - 34381048
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    |||||||| |||||| | ||||||||||||| |||||||| ||||||||||    
T  34381098 aagagagagaataagagaataatgtgagtatgagagagaaagttgtcaaaa 34381048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 278
Target Start/End: Complemental strand, 12401278 - 12401197
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    |||||||| ||||||   ||||||||||||| |||||||| ||||| ||||  || | | ||||| ||||||||||||||||    
T  12401278 aagagagataataagaccataatgtgagtatgagagagaaagttgtaaaaaagttgttacaaattgattgtacaaatatcat 12401197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 22653740 - 22653696
Alignment:
Q  198 agagagaaaataagtggataatgtgagtatcagagagaacgttgt 242  Q
    ||||||||||||||  |||||||||||||| |||||||| |||||    
T  22653740 agagagaaaataagaagataatgtgagtatgagagagaaagttgt 22653696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 159
Target Start/End: Original strand, 24431507 - 24431539
Alignment:
Q  127 gagtagtgatattttaacaaccatttgagacaa 159  Q
    |||||||||||||| ||||||||||||||||||    
T  24431507 gagtagtgatatttgaacaaccatttgagacaa 24431539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 37821111 - 37821155
Alignment:
Q  198 agagagaaaataagtggataatgtgagtatcagagagaacgttgt 242  Q
    ||||||||||||||  |||||||||||||| |||||||| |||||    
T  37821111 agagagaaaataagaagataatgtgagtataagagagaaggttgt 37821155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 215 - 278
Target Start/End: Original strand, 42665815 - 42665878
Alignment:
Q  215 ataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    ||||||||||||| |||||||| ||||||||||  || ||||||| | ||||||||||||||||    
T  42665815 ataatgtgagtatgagagagaaagttgtcaaaaagttgtaataaagtgattgtacaaatatcat 42665878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 28014042 - 28013992
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    ||||||||||||||| |||||| |||||||| |||||||| ||||||||||    
T  28014042 aagagagaaaataagaggataacgtgagtatgagagagaaagttgtcaaaa 28013992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 41868354 - 41868436
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtc-aaaattttttaataaattaattgtacaaatatcat 278  Q
    |||||||| ||||||  |||||||||||||| |||||||| |||||| |||| || |||| ||| | ||||||||||||||||    
T  41868354 aagagagagaataagaagataatgtgagtatgagagagaaagttgtcaaaaagttgttaaaaaaatgattgtacaaatatcat 41868436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 278
Target Start/End: Original strand, 7497994 - 7498057
Alignment:
Q  215 ataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    ||||||||||||| |||||||| ||||||||||  || ||||||| |  |||||||||||||||    
T  7497994 ataatgtgagtatgagagagaaagttgtcaaaaagttgtaataaaatggttgtacaaatatcat 7498057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 278
Target Start/End: Original strand, 41353500 - 41353563
Alignment:
Q  215 ataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    ||||||||||||| |||||||| ||||| ||||  || | ||||||| ||||||||||||||||    
T  41353500 ataatgtgagtatgagagagaaagttgttaaaaaattatcataaattgattgtacaaatatcat 41353563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 1889233 - 1889183
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    |||||||| |||||| | ||||||||||||| |||||||| ||||||||||    
T  1889233 aagagagagaataagagtataatgtgagtatgagagagaaagttgtcaaaa 1889183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 5455438 - 5455488
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    |||||||| ||||||  |||||||||||||| |||||||| ||||||||||    
T  5455438 aagagagagaataagaagataatgtgagtataagagagaaagttgtcaaaa 5455488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 6639457 - 6639507
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    ||||||||||||||| | ||||||||||||| |||||||| ||||| ||||    
T  6639457 aagagagaaaataagagtataatgtgagtatgagagagaaagttgttaaaa 6639507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 7086109 - 7086159
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    ||||| || |||||| ||||||||||||||| |||||||| ||||||||||    
T  7086109 aagagggagaataagaggataatgtgagtatgagagagaaagttgtcaaaa 7086159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 31635795 - 31635845
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    |||||||| ||||||  |||||||||||||| |||||||| ||||||||||    
T  31635795 aagagagataataagaagataatgtgagtatgagagagaaagttgtcaaaa 31635845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 32750084 - 32750034
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    ||||| || |||||| |||||||||||||||||||| ||| ||||||||||    
T  32750084 aagagggagaataagaggataatgtgagtatcagagggaaagttgtcaaaa 32750034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 159
Target Start/End: Original strand, 2013173 - 2013206
Alignment:
Q  126 agagtagtgatattttaacaaccatttgagacaa 159  Q
    |||||||||||||||||||| |||||||||||||    
T  2013173 agagtagtgatattttaacatccatttgagacaa 2013206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 278
Target Start/End: Complemental strand, 22390238 - 22390157
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    |||||||| |||||| | ||||||| ||||| |||||||| ||||||||||  || | ||| | | ||||||||||||||||    
T  22390238 aagagagagaataagagtataatgtaagtatgagagagaatgttgtcaaaaagttgtcatagagtgattgtacaaatatcat 22390157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 278
Target Start/End: Complemental strand, 34372933 - 34372852
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    |||||||| ||||||  |||||||||||||| ||||||||  |||||||||  || | | ||| |||||||| |||||||||    
T  34372933 aagagagagaataagatgataatgtgagtatgagagagaaaattgtcaaaaaattgttagaaaataattgtagaaatatcat 34372852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 159
Target Start/End: Complemental strand, 28014126 - 28014094
Alignment:
Q  127 gagtagtgatattttaacaaccatttgagacaa 159  Q
    |||||||||||||||||||||||||| ||||||    
T  28014126 gagtagtgatattttaacaaccatttaagacaa 28014094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 159
Target Start/End: Original strand, 45693356 - 45693388
Alignment:
Q  127 gagtagtgatattttaacaaccatttgagacaa 159  Q
    |||||||||||||| ||||||||||||||||||    
T  45693356 gagtagtgatatttaaacaaccatttgagacaa 45693388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 27425 - 27375
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    |||||||| |||||| ||||||||||||||| |||||||| ||||||||||    
T  27425 aagagagagaataagaggataatgtgagtatgagagagaaagttgtcaaaa 27375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 19789061 - 19789142
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    |||||||| ||||||   ||||||||||||| |||||||| ||||||||||  || ||||||| |  |||||||||||||||    
T  19789061 aagagagagaataagactataatgtgagtatgagagagaaagttgtcaaaaagttgtaataaaatggttgtacaaatatcat 19789142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 247
Target Start/End: Complemental strand, 1196134 - 1196083
Alignment:
Q  196 aaagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    ||||||||| |||||| | ||||||||||||| |||||||| ||||||||||    
T  1196134 aaagagagagaataagagtataatgtgagtattagagagaaagttgtcaaaa 1196083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 247
Target Start/End: Complemental strand, 21506423 - 21506372
Alignment:
Q  196 aaagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    ||||||||| ||||||  |||||||||||||| |||||||| ||||||||||    
T  21506423 aaagagagagaataagaagataatgtgagtatgagagagaaagttgtcaaaa 21506372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 275
Target Start/End: Original strand, 30253298 - 30253376
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatat 275  Q
    |||||||| ||||||   ||||||||||||| |||||||| ||||| ||||  || ||||||| | |||||||||||||    
T  30253298 aagagagagaataagaatataatgtgagtatgagagagaaagttgttaaaaaattgtaataaagtgattgtacaaatat 30253376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 159
Target Start/End: Complemental strand, 2163862 - 2163829
Alignment:
Q  126 agagtagtgatattttaacaaccatttgagacaa 159  Q
    ||||||||||||||||||||| ||||||||||||    
T  2163862 agagtagtgatattttaacaatcatttgagacaa 2163829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 159
Target Start/End: Complemental strand, 2175495 - 2175462
Alignment:
Q  126 agagtagtgatattttaacaaccatttgagacaa 159  Q
    ||||||||||||||||||||| ||||||||||||    
T  2175495 agagtagtgatattttaacaatcatttgagacaa 2175462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 23633308 - 23633389
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    |||||||| ||||||   ||||||||||||| |||||||| ||||||||||  || ||||||| |  ||||| |||||||||    
T  23633308 aagagagagaataagaatataatgtgagtatgagagagaaagttgtcaaaaagttataataaagtggttgtagaaatatcat 23633389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 278
Target Start/End: Complemental strand, 3821463 - 3821383
Alignment:
Q  198 agagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    |||||||| |||||   ||||||| ||||| |||||||| ||||||||||  || ||||||| |  |||||||||||||||    
T  3821463 agagagaagataagaatataatgtaagtatgagagagaaagttgtcaaaaaattgtaataaagtggttgtacaaatatcat 3821383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 277
Target Start/End: Complemental strand, 7693401 - 7693321
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatca 277  Q
    |||||||| ||||||   ||||||||||||| |||||||| ||||| ||||  || ||||||| |  ||||||||||||||    
T  7693401 aagagagagaataagaatataatgtgagtatgagagagaaagttgttaaaaaattataataaagtggttgtacaaatatca 7693321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 159
Target Start/End: Complemental strand, 30733191 - 30733159
Alignment:
Q  127 gagtagtgatattttaacaaccatttgagacaa 159  Q
    |||||||||||||| ||||||||||||||||||    
T  30733191 gagtagtgatatttaaacaaccatttgagacaa 30733159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 278
Target Start/End: Complemental strand, 199334 - 199271
Alignment:
Q  215 ataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    ||||||||||||| |||||||| ||||||||||  || ||||||| |  |||||||||||||||    
T  199334 ataatgtgagtatgagagagaaagttgtcaaaaaattgtaataaagtggttgtacaaatatcat 199271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 31585 - 31635
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    |||||||| |||||| | ||||||||||||| |||||||| ||||||||||    
T  31585 aagagagagaataagagtataatgtgagtatgagagagaaagttgtcaaaa 31635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 278
Target Start/End: Complemental strand, 34491 - 34413
Alignment:
Q  200 agagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    |||||||||||| | ||||||||||||| |||||||| ||||||| ||  || | | ||| || |||||||||||||||    
T  34491 agagaaaataagagtataatgtgagtatgagagagaaagttgtcacaaagttgtcaaaaaatagttgtacaaatatcat 34413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 278
Target Start/End: Complemental strand, 36085 - 36007
Alignment:
Q  200 agagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    ||||| |||||| | ||||||||||||| |||||||| ||||||||||  || | | ||| || |||||||||||||||    
T  36085 agagagaataagagaataatgtgagtataagagagaaagttgtcaaaaaattatcacaaagtagttgtacaaatatcat 36007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 6513 - 6463
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaa 247  Q
    |||||||| |||||| | ||||||||||||| |||||||| ||||||||||    
T  6513 aagagagagaataagagtataatgtgagtatgagagagaatgttgtcaaaa 6463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 159
Target Start/End: Original strand, 18547 - 18580
Alignment:
Q  126 agagtagtgatattttaacaaccatttgagacaa 159  Q
    ||||||||||||||||||||| ||||||||||||    
T  18547 agagtagtgatattttaacaatcatttgagacaa 18580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 278
Target Start/End: Complemental strand, 155992 - 155911
Alignment:
Q  197 aagagagaaaataagtggataatgtgagtatcagagagaacgttgtcaaaattttttaataaattaattgtacaaatatcat 278  Q
    |||||||| ||||||   ||||||||||||  |||||||| ||||||||||  || ||||||| |  |||||||||||||||    
T  155992 aagagagagaataagaatataatgtgagtacgagagagaaagttgtcaaaaagttgtaataaaatggttgtacaaatatcat 155911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 278
Target Start/End: Original strand, 34796 - 34860
Alignment:
Q  215 ataatgtgagtatcagagagaacgttgtca-aaattttttaataaattaattgtacaaatatcat 278  Q
    ||||||||||||| |||||||| ||||||| |||  || | | ||||||||||||||||||||||    
T  34796 ataatgtgagtatgagagagaaagttgtcataaaaattgtcacaaattaattgtacaaatatcat 34860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University