View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12528_high_23 (Length: 242)
Name: NF12528_high_23
Description: NF12528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12528_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 35040991 - 35041183
Alignment:
| Q |
19 |
atattgtttgtattaatattttttactcctgcaaagtttgttgagtttttaaagaacctttctttcatcatctaaaaacaacgnnnnnnnnccgtgaccg |
118 |
Q |
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| T |
35040991 |
atattgtttgtattaatatttt--actcctgcaaagtttgttgagtttttaaagaacctttctttaatcatctaaaaacgatgttttttttccgtgaccg |
35041088 |
T |
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| Q |
119 |
tcgtatggattacagcgacttgcgttcgttcttgattgaaacaagaaagcaagagtgaacatcaatacatcattccacctatgctaaaaaatatcg |
214 |
Q |
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| T |
35041089 |
tcgtatggattacagcgacttgtgttcgttcttgattgaaacaag-aagcaagagtgaacatcaatacatcattccacctatgctaaaaattatcg |
35041183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 216
Target Start/End: Original strand, 35018886 - 35018965
Alignment:
| Q |
134 |
cgacttgcgttcgttcttgattgaaacaagaaagcaagagtgaacatcaatacatcattccacctatgctaaaaaatatcgta |
216 |
Q |
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||||||| |||||||||||||||||||| ||| |||||||| |||||||| | |||||||||| ||||||||||||||||||| |
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| T |
35018886 |
cgacttgtgttcgttcttgattgaaacatgaa-gcaagagt-aacatcaa-atatcattccacttatgctaaaaaatatcgta |
35018965 |
T |
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