View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12528_high_3 (Length: 512)
Name: NF12528_high_3
Description: NF12528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12528_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 26 - 493
Target Start/End: Original strand, 4564623 - 4565097
Alignment:
| Q |
26 |
agagagatctaggaagggttaaaagaatcaaattccttaataaagaaacaagagaaagaaggttaagtgaaagttgtgtatgtgaatgtgtgggtcatat |
125 |
Q |
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| T |
4564623 |
agagagatataggaagggttaaaagaatcaaattccttaataaagaaacaagagaaagaaggttaagtgaaagttgtgtatgtgaatgtgtgggtcatat |
4564722 |
T |
|
| Q |
126 |
atggtcatttccttcctaccacttccatgtgaacgtggggtgggtcctgttgcttcaacctctcttctttagcatgtggattttgtcagagggaaaaaac |
225 |
Q |
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| T |
4564723 |
atggtcatttccttcctaccacttccatgtgaacgtggggtgggtcctgttgcttcaacctctcttctttagcatgtggattttgtcagagggaaaaaac |
4564822 |
T |
|
| Q |
226 |
ttaaacaggtggagaagtggatttgtatactcattacccaatagaaaagaaaattaaataagaaa-------aagtggatatagatagagagatattcgg |
318 |
Q |
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| T |
4564823 |
ttaaacaggtggagaagtggatttgtatactcattacccaatagaaaagaaaattgaataagaaaattacccaagtggatatagatagagagatattcgg |
4564922 |
T |
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| Q |
319 |
tttaaagctgcaggatcaaatgcacatgatcaaatattctcatacatatctcactttctcagaattgcactttgatgggttctcacttttcctcccatac |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4564923 |
tttaaagctgcaggatcaaatgcacatgatcaaatattctcatacatatctcactttctcagaattgcactttgatgggttctcacttttcctcccatac |
4565022 |
T |
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| Q |
419 |
ttgggtatttttgatatatagatataaattgtgagatttgcaaccactattgtgggtgcattataaggattattc |
493 |
Q |
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||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4565023 |
ttgggtacttttgatatatagatctaaattgtgagatttgcaaccactattgtgggtgcattataaggattattc |
4565097 |
T |
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