View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12528_high_4 (Length: 510)
Name: NF12528_high_4
Description: NF12528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12528_high_4 |
 | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 17 - 418
Target Start/End: Complemental strand, 35927984 - 35927583
Alignment:
| Q |
17 |
atcaactgccaaggattcttacgtcttcctaatcaactggctggagagatttccacagtacaaaacaagagctttttacatagctggagagagttatgct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35927984 |
atcaactgccaaggattcttacgtcttcctaatcaactggctggagagatttccacagtacaaaacaagagctttttacatagctggagagagttatgct |
35927885 |
T |
|
| Q |
117 |
ggtcattatgttcctcaacttgcatcgactattcttcacaacaataaactctataacaacactgttattaacctcaaaggcatttctgtatgttcttcaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35927884 |
ggtcattatgttcctcaacttgcatcgactattcttcacaacaataaactctataacaacactgttattaacctcaaaggcatttctgtatgttcttcaa |
35927785 |
T |
|
| Q |
217 |
acttcaaaagaccaagtatgaaatgtaactcacaatctcataaatctaacttcagtattatctttactttaaaaaatttcagatagggaatgcttggatt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35927784 |
acttcaaaagaccaagtatgaaatgtaactcacaatctcataaatctaactttattattatctttactttaaaaaatttcagatagggaatgcttggatt |
35927685 |
T |
|
| Q |
317 |
gatgatgccacaagtttgaaggggttatttgattacttttggactcatgctttgaactcagatcaaactcatgagttgattgagaagtattgcgacttca |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
35927684 |
gatgatgccacaagtttgaaggggttatttgattacttttggactcatgctttgaattcagatcaaactcatgagttgattgagaagtactgtgacttca |
35927585 |
T |
|
| Q |
417 |
ct |
418 |
Q |
| |
|
|| |
|
|
| T |
35927584 |
ct |
35927583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 42 - 507
Target Start/End: Complemental strand, 35914994 - 35914529
Alignment:
| Q |
42 |
ttcctaatcaactggctggagagatttccacagtacaaaacaagagctttttacatagctggagagagttatgctggtcattatgttcctcaacttgcat |
141 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| || ||||||| |
|
|
| T |
35914994 |
ttcctcatcaactggctggagagatttccacagtacaaaacaagagctttttacataactggagagagttatgctggtcactatgttccgcagcttgcat |
35914895 |
T |
|
| Q |
142 |
cgactattcttcacaacaataaactctataacaacactgttattaacctcaaaggcatttctgtatgttcttcaaacttcaaaagaccaagtatgaaatg |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||| || ||| ||| |
|
|
| T |
35914894 |
cgactattcttcacaacaataaactctataacaacaccactattaacctcaaaggcatttctgtatgttgttcaaactttgaaagactaataatgcaata |
35914795 |
T |
|
| Q |
242 |
taactcacaatctcataaatctaacttcagtattatctttactttaaaaaatttcagatagggaatgcttggattgatgatgccacaagtttgaaggggt |
341 |
Q |
| |
|
||||| ||| |||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| | ||||| |
|
|
| T |
35914794 |
taactgtcaacctcataaatctaactttatcattatctttacaataaaaaatttcagatagggaatgcttggattgatgatgccacaggtttaagggggt |
35914695 |
T |
|
| Q |
342 |
tatttgattacttttggactcatgctttgaactcagatcaaactcatgagttgattgagaagtattgcgacttcacttctgaaaacgtttcatcaatttg |
441 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
35914694 |
tatttgattacctttggactcatgcgttgaactcggatcaaactcatgagttgattgagaagtattgtgacttcacttctgaaaacgtttcatcaatttg |
35914595 |
T |
|
| Q |
442 |
tatcaatgcaacacataaggccttccttgagcaaggaaagatagactcccataacatctgtgctcc |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
35914594 |
tatcaatgcaacacataaggccttccttgagcaaggaaagatagactcctataacatctatgctcc |
35914529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 507
Target Start/End: Complemental strand, 35910583 - 35910091
Alignment:
| Q |
18 |
tcaactgccaaggattcttacgtcttcctaatcaactggctggagagatttccacagtacaaaacaagagctttttacatagctggagagagttatgctg |
117 |
Q |
| |
|
||||||||||| || | || |||||||| ||||||||||||||||||||||||| |||||||| |||| |||||||||| |||||||||||||||||| |
|
|
| T |
35910583 |
tcaactgccaaagacacctatgtcttcctcgtcaactggctggagagatttccacaatacaaaaccagagatttttacataactggagagagttatgctg |
35910484 |
T |
|
| Q |
118 |
gtcattatgttcctcaacttgcatcgactattcttcacaacaataaactctataacaacactgttattaacctcaaaggcatttctgtatgttcttcaaa |
217 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||| | ||| || |
|
|
| T |
35910483 |
gtcattatgttcctcaacttgcatccactattctacacaacaataaactctataacaacaccattgttaacctcaaaggcatttctgtatgattttccaa |
35910384 |
T |
|
| Q |
218 |
cttcaaaagaccaagtatgaaatgtaactcacaatctcataaatctaacttcagtattatctttactttaaaaaatttcagatagggaatgcttggattg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35910383 |
cttcaaaagaccaagtatgaaatgtaactcacaatctcataaatctaacttcagtattatctttactttaaaaaatttcagatagggaatgcttggattg |
35910284 |
T |
|
| Q |
318 |
atgatgccacaagtttgaaggggttatttgattacttttggactcatgctttgaactcagatcaaactcatgagttgattgagaagtattgcgacttcac |
417 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
35910283 |
atgatgccacaagtttaaaggggttttttgattacctttggactcatgctttgaactcagatcaaactcatgagttgattgagaagtactgtgacttcac |
35910184 |
T |
|
| Q |
418 |
ttctgaaaacgtttcatcaatttgtatc---aatgcaacacataaggccttccttgagcaaggaaagatagactcccataacatctgtgctcc |
507 |
Q |
| |
|
| ||||||| |||||| ||||||||||| |||| ||||| ||||||||| |||| || ||||||||||||| ||||||||| |||||| |
|
|
| T |
35910183 |
tactgaaaatgtttcagcaatttgtatcaataatgtaacactaaaggccttctttgaacatggaaagatagacttatataacatctatgctcc |
35910091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 39 - 487
Target Start/End: Complemental strand, 35921369 - 35920921
Alignment:
| Q |
39 |
gtcttcctaatcaactggctggagagatttccacagtacaaaacaagagctttttacatagctggagagagttatgctggtcattatgttcctcaacttg |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
35921369 |
gtcttcctaatcaactggctggagagatttccacagtacaaaaccagagatttttacataactggagagagttatgccggtcattatgttcctcaacttg |
35921270 |
T |
|
| Q |
139 |
catcgactattcttcacaacaataaactctataacaacactgttattaacctcaaaggcatttctgtatgttcttcaaacttcaaaagaccaagtatgaa |
238 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| || ||| || ||||| |
|
|
| T |
35921269 |
catccactattctttacaacaataaactctataacaacaccattattaacctcaaaggcatttctgtatgttgttcaaacttcgaatgactaataatgaa |
35921170 |
T |
|
| Q |
239 |
atgtaactcacaatctcataaatctaacttcagtattatctttactttaaaaaatttcagatagggaatgcttggattgatgatgccacaagtttgaagg |
338 |
Q |
| |
|
|| |||||| ||||||||||| ||||| ||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| || | ||| |||| |
|
|
| T |
35921169 |
atataactcgcaatctcataattctaatctcattattatctatacttaaaaaaatttcagatagggaatgcttggattgatgatgcgacgaatttaaagg |
35921070 |
T |
|
| Q |
339 |
ggttatttgattacttttggactcatgctttgaactcagatcaaactcatgagttgattgagaagtattgcgacttcacttctgaaaacgtttcatcaat |
438 |
Q |
| |
|
|| ||| |||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||| ||||| |||||| |||| |
|
|
| T |
35921069 |
ggatatatgataacttgtggactcatgctttaaactcagatcaaactcatgagttgattgagaagtactgtgacttcactaaagaaaatgtttcagcaat |
35920970 |
T |
|
| Q |
439 |
ttgtatcaatgcaacacataaggccttccttgagcaaggaaagatagac |
487 |
Q |
| |
|
||||| ||||||||| ||||||||||| ||||| ||||||||||||| |
|
|
| T |
35920969 |
ttgtaacaatgcaactgataaggccttcgttgagacaggaaagatagac |
35920921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 17 - 507
Target Start/End: Complemental strand, 35940360 - 35939874
Alignment:
| Q |
17 |
atcaactgccaaggattcttacgtcttcctaatcaactggctggagagatttccacagtacaaaacaagagctttttacatagctggagagagttatgct |
116 |
Q |
| |
|
|||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
35940360 |
atcaactgccaaggattcctatgtcttccttatcaactggctggagagatttccacagtacaaaacaagagatttttacataagtggagagagttatgct |
35940261 |
T |
|
| Q |
117 |
ggtcattatgttcctcaacttgcatcgactattcttcacaacaataaactctataacaacactgttattaacctcaaaggcatttctgtatgttcttcaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
35940260 |
ggtcattatgttcctcaacttgcatccactattctacacaacaataaactctataagaacaccattattaacctcaaaggcatttctgtatgttgatcaa |
35940161 |
T |
|
| Q |
217 |
acttcaaaagaccaagtatgaaatgtaactcacaatctcataaatctaacttcagtattatctttactttaaaaaatttcagatagggaatgcttggatt |
316 |
Q |
| |
|
|||||||||||| || ||| ||| ||| ||||||||||||| ||||||||||| |||||| ||| | | |||||||||| ||||||||||||||||| |
|
|
| T |
35940160 |
acttcaaaagactaataatgcaatataaatcacaatctcatatatctaacttca---ttatctgtacat-acaaaatttcagttagggaatgcttggatt |
35940065 |
T |
|
| Q |
317 |
gatgatgccacaagtttgaaggggttatttgattacttttggactcatgctttgaactcagatcaaactcatgagttgattgagaagtattgcgacttca |
416 |
Q |
| |
|
|||||||| |||||||| |||||||||| |||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
35940064 |
gatgatgctacaagtttaaaggggttatatgataacttgtggactcatgctttgaactcggatcaaactcatgagttgattgagaagtactgtgacttca |
35939965 |
T |
|
| Q |
417 |
cttctgaaaacgtttcatcaatttgtatcaatgcaacacataaggccttccttgagcaaggaaagatagactcccataacatctgtgctcc |
507 |
Q |
| |
|
|| |||| |||| ||||||||| |||||||| ||| | || | ||||| ||||||||||||||||| |||||||| |||||| |
|
|
| T |
35939964 |
ctaaacaaaattattcagcaatttgtaccaatgcaatgaatatgtccatgattgagaaaggaaagatagactcctttaacatctatgctcc |
35939874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 42 - 500
Target Start/End: Complemental strand, 35934772 - 35934315
Alignment:
| Q |
42 |
ttcctaatcaactggctggagagatttccacagtacaaaacaagagctttttacatagctggagagagttatgctggtcattatgttcctcaacttgcat |
141 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35934772 |
ttcctaatcaactggctggagagatttccacagtacaaaaccagagatttttacataactggagagagttatgctggtcattatgttcctcaacttgcat |
35934673 |
T |
|
| Q |
142 |
cgactattcttcacaacaataaactctataacaacactgttattaacctcaaaggcatttctgtatgttcttcaaacttcaaaagaccaagtatgaaatg |
241 |
Q |
| |
|
| |||||||||||| || |||||||||||||||| || | ||||||||||||||||| |||||||||| |||| ||||||||||| || ||| ||| |
|
|
| T |
35934672 |
ccactattcttcaccaccataaactctataacaaaaccatcattaacctcaaaggcatatctgtatgttgatcaatcttcaaaagactaataatgcaata |
35934573 |
T |
|
| Q |
242 |
taactcacaatctcataaatctaacttcagtattatctttactttaaaaaatttcagatagggaatgcttggattgatgatgccacaagtttgaaggggt |
341 |
Q |
| |
|
|||||||| ||| |||| | ||||||||| ||||| | ||| || ||| |||||||||||||||||||||||||||||||| ||| || ||||||| |
|
|
| T |
35934572 |
taactcactatcacatataactaacttcatgattatttgtac-ttcaaatttttcagatagggaatgcttggattgatgatgctacaggtgacaaggggt |
35934474 |
T |
|
| Q |
342 |
tatttgattacttttggactcatgctttgaactcagatcaaactcatgagttgattgagaagtattgcgacttcacttctgaaaacgtttcatcaatttg |
441 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||| |||| ||||||| |
|
|
| T |
35934473 |
tatttgattacttctggactcatgctttgaactcagatcaaactcatgagttgattgagaagtactgtgacttcactaaacaaaattattcaacaatttg |
35934374 |
T |
|
| Q |
442 |
tatcaatgcaacacataaggccttccttgagcaaggaaagatagactcccataacatct |
500 |
Q |
| |
|
|||||||| |||| || ||||||| ||||| ||||||||||||||| | ||||||||| |
|
|
| T |
35934373 |
tatcaatgtaacagattgggccttcattgagaaaggaaagatagacttctataacatct |
35934315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 11084527 - 11084471
Alignment:
| Q |
84 |
agagctttttacatagctggagagagttatgctggtcattatgttcctcaacttgca |
140 |
Q |
| |
|
|||| ||| ||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11084527 |
agagatttctacattgctggagaaagttatgctggtcattatgttcctcaacttgca |
11084471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 388 - 507
Target Start/End: Original strand, 21285096 - 21285218
Alignment:
| Q |
388 |
tgagttgattgagaagtattgcgacttcacttctgaaaacgtttcatcaatttgtatc---aatgcaacacataaggccttccttgagcaaggaaagata |
484 |
Q |
| |
|
|||||||||||||||||| || | ||||||| ||||||| |||||| ||||||||||| |||| ||||| |||||||| |||| || ||||||||| |
|
|
| T |
21285096 |
tgagttgattgagaagtactgtggcttcactactgaaaatgtttcagcaatttgtatcaataatgtaacactaaaggccttgtttgaacatggaaagata |
21285195 |
T |
|
| Q |
485 |
gactcccataacatctgtgctcc |
507 |
Q |
| |
|
|||| ||||||||| |||||| |
|
|
| T |
21285196 |
gacttatataacatctatgctcc |
21285218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 6208910 - 6208831
Alignment:
| Q |
54 |
tggctggagagatttccacagtacaaaacaagagctttttacatagctggagagagttatgctggtcattatgttcctca |
133 |
Q |
| |
|
||||| ||||||||||||||||| || || ||| ||| | ||||||||| || ||||||||||| |||||||||||||| |
|
|
| T |
6208910 |
tggcttgagagatttccacagtataagactcgagatttcttcatagctggtgaaagttatgctggccattatgttcctca |
6208831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 136
Target Start/End: Complemental strand, 6215780 - 6215695
Alignment:
| Q |
51 |
aactggctggagagatttccacagtacaaaacaagagctttttacatagctggagagagttatgctggtcattatgttcctcaact |
136 |
Q |
| |
|
|||||||| ||||||||||||||||| || | ||| ||| | |||| |||| || ||||||||||| |||||||| |||||||| |
|
|
| T |
6215780 |
aactggcttgagagatttccacagtataagattcgagatttcttcataactggtgaaagttatgctggccattatgtccctcaact |
6215695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 138
Target Start/End: Complemental strand, 316183 - 316145
Alignment:
| Q |
100 |
ctggagagagttatgctggtcattatgttcctcaacttg |
138 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
316183 |
ctggagaaagttatgctggacattatgttcctcaacttg |
316145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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