View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12528_high_5 (Length: 494)
Name: NF12528_high_5
Description: NF12528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12528_high_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 18 - 494
Target Start/End: Complemental strand, 56009522 - 56009044
Alignment:
| Q |
18 |
caagtgatgtttttccaagtgttcctcatattcaatttcgtgttgatgcatttgaaaaacttgaacagtatagtgtgtaaaactcacaatcaaagaaact |
117 |
Q |
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| T |
56009522 |
caagtgatgtttttccaagtgttcctcatattcaatttcgtgttgatgcatttgaaaaacttgaacagtatagtgtgtaaaactcacaatcaaagaaact |
56009423 |
T |
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| Q |
118 |
cttttatacaaatttacaggttcacattgaacatttttgtttgtacataatcaaattatggaacgccttttcgctagtggagatttattccaatatacta |
217 |
Q |
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| T |
56009422 |
cttttatacaaatttacaggttcacattgaacatttttgtttgtacataatcaaattatggaactccttttcgctagtggaaatttattccaatatacta |
56009323 |
T |
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| Q |
218 |
atctcatcaaatgttttgtatttataaagaaaaatca--gagttgatcaataaaattcctttagctatctccaaataaagattcgtcaatgttttttcat |
315 |
Q |
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|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56009322 |
atctcatcaaatgttttgtatttacaaagaaaaatcacagagttgatcaataaaattcctttagctatctccaaataaagattcgtcaatgttttttcat |
56009223 |
T |
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| Q |
316 |
caccctgcagaaattttataacattgttatggtatagttaagacaaacagaacaaacttgttagcatgtatcagccacgctaaccttttagaggagtctt |
415 |
Q |
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| T |
56009222 |
caccctgcagaaattttataacattgttatcgtatagttaagacaaacagaacaaacttgttagcatgtatcagccacgctaaccttttagaggagtctt |
56009123 |
T |
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| Q |
416 |
cgtttctgtttttcctgttatcatctgaacttaatattgttgaaacctccttttctctagcagctgcatctcttttcat |
494 |
Q |
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| T |
56009122 |
cgtttctgtttttcctgttatcatctgaacttaatattgttgaaacctccttttctctagcagctgcatctcttttcat |
56009044 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 290 - 343
Target Start/End: Complemental strand, 9645724 - 9645671
Alignment:
| Q |
290 |
ataaagattcgtcaatgttttttcatcaccctgcagaaattttataacattgtt |
343 |
Q |
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| T |
9645724 |
ataaagaatcttcaatgttctttcatcaccctgcagtaattttatagcattgtt |
9645671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 352
Target Start/End: Complemental strand, 24538286 - 24538244
Alignment:
| Q |
310 |
tttcatcaccctgcagaaattttataacattgttatggtatag |
352 |
Q |
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| T |
24538286 |
tttcatcacactgcaacaattttataacattgttatggtatag |
24538244 |
T |
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