View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12528_low_11 (Length: 386)
Name: NF12528_low_11
Description: NF12528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12528_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 11 - 368
Target Start/End: Original strand, 13139396 - 13139753
Alignment:
| Q |
11 |
cagagaggttggtgctagaaataagattagctatagaggttctccaatgaatggttttgctgttgaatcttttttggttccttgcaaaccagattacatt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13139396 |
cagagaggttggtgctagaaataagattagctatagaggttctccaatgaatggttttgctgttgaatcttttttggttccttgcaaaccagattacatt |
13139495 |
T |
|
| Q |
111 |
gaagatattgatcattgcagcagtaataactagcctaccttgggggctagagcatttgttaatggtggaccacatttcttctttagattgaaactgaaga |
210 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13139496 |
gaagatattgatcattgcagcagtaataactagcttaccttgggggctagagcatttgttaatggtggaccacatttcttctttagattgaaactgaaga |
13139595 |
T |
|
| Q |
211 |
ggacagtttaaacaagtagcaaaccacctccaaatattaactgcatactgacatagaaaaaatagatgaaaattggattcttcttgagccaagcataaag |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13139596 |
ggacagtttaaacaagtagcaaaccacctccaaatattaactgcatactgacatagaaaaaatagatgaaaattggattcttcttgagccaagcataaag |
13139695 |
T |
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| Q |
311 |
agcacactgaaggaagatgacatcctcgggaggctaagacttcatcagtaggtaattt |
368 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13139696 |
agcacactgaaggaagatgacatcctcgggaggctaagacttcatcagtaggtaattt |
13139753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 11 - 368
Target Start/End: Original strand, 24558096 - 24558453
Alignment:
| Q |
11 |
cagagaggttggtgctagaaataagattagctatagaggttctccaatgaatggttttgctgttgaatcttttttggttccttgcaaaccagattacatt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24558096 |
cagagaggttggtgctagaaataagattagctatagaggttctccaatgaatggttttgctgttgaatcttttttggttccttgcaaaccagattacatt |
24558195 |
T |
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| Q |
111 |
gaagatattgatcattgcagcagtaataactagcctaccttgggggctagagcatttgttaatggtggaccacatttcttctttagattgaaactgaaga |
210 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24558196 |
gaagatattgatcattgcagcagtaataactagcttaccttgggggctagagcatttgttaatggtggaccacatttcttctttagattgaaactgaaga |
24558295 |
T |
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| Q |
211 |
ggacagtttaaacaagtagcaaaccacctccaaatattaactgcatactgacatagaaaaaatagatgaaaattggattcttcttgagccaagcataaag |
310 |
Q |
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| T |
24558296 |
ggacagtttaaacaagtagcaaaccacctccaaatattaactgcatactgacatagaaaaaatagatgaaaattggattcttcttgagccaagcataaag |
24558395 |
T |
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| Q |
311 |
agcacactgaaggaagatgacatcctcgggaggctaagacttcatcagtaggtaattt |
368 |
Q |
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| T |
24558396 |
agcacactgaaggaagatgacatcctcgggaggctaagacttcatcagtaggtaattt |
24558453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 163 - 368
Target Start/End: Original strand, 13142330 - 13142535
Alignment:
| Q |
163 |
catttgttaatggtggaccacatttcttctttagattgaaactgaagaggacagtttaaacaagtagcaaaccacctccaaatattaactgcatactgac |
262 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
13142330 |
catttcttaatggtggaccacatttcttctttagattgaaactaaagaggacagtttaaacaagtagcaaaccacctccaaatattaactgcatactaac |
13142429 |
T |
|
| Q |
263 |
atagaaaaaatagatgaaaattggattcttcttgagccaagcataaagagcacactgaaggaagatgacatcctcgggaggctaagacttcatcagtagg |
362 |
Q |
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|| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13142430 |
attgaaaaaatatatgaaaattggattcttcttgagccaagcataaagagcacactgaaggaagatgacatcctcgggaggctaagacttcatcagtagg |
13142529 |
T |
|
| Q |
363 |
taattt |
368 |
Q |
| |
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|||||| |
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| T |
13142530 |
taattt |
13142535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 337
Target Start/End: Original strand, 21239122 - 21239193
Alignment:
| Q |
266 |
gaaaaaatagatgaaaattggattcttcttgagccaagcataaagagcacactgaaggaagatgacatcctc |
337 |
Q |
| |
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||||||| |||||||| |||||||||| ||| ||||||||||||||| |||||| ||||||||||||| |
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| T |
21239122 |
gaaaaaaaagatgaaatgtggattcttcatgaatggagcataaagagcacattgaagggagatgacatcctc |
21239193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 94 - 242
Target Start/End: Original strand, 34240193 - 34240341
Alignment:
| Q |
94 |
gcaaaccagattacattgaagatattgatcattgcagcagtaataactagcctaccttgggggctagagcatttgttaatggtggaccacatttcttctt |
193 |
Q |
| |
|
|||||||| || |||||||||||||||||||| |||||||||||||| || | ||||| | ||||||||| ||||||||| |||||||||| ||||| | |
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| T |
34240193 |
gcaaaccaaatcacattgaagatattgatcatagcagcagtaataacaagttttccttgagagctagagcacttgttaatgatggaccacatgtcttcct |
34240292 |
T |
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| Q |
194 |
tagattgaaactgaagaggacagtttaaacaagtagcaaaccacctcca |
242 |
Q |
| |
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| | ||| |||||||||| ||| |||||||||| ||||||||| ||||| |
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| T |
34240293 |
tggtttggaactgaagagcacaatttaaacaagaagcaaaccaactcca |
34240341 |
T |
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