View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12528_low_12 (Length: 383)
Name: NF12528_low_12
Description: NF12528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12528_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 20 - 375
Target Start/End: Complemental strand, 45641544 - 45641189
Alignment:
| Q |
20 |
ataatgccactgaatttcaaaatgagacaggacagaagaaacaccccacaatacagacaaattccatctgaacacaacaaaataaaatcaataatggata |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45641544 |
ataatgccactgaatttcaaaatgagacaggacagaacaaacacccaacaatacagacaaattccatctgaacacaacaaaataaaatcaataatggata |
45641445 |
T |
|
| Q |
120 |
tccaaacattactaatcaatcattcaatcaatgattcaatatgtggattgcattctttggaacaaaaatcattcttctctaataaactcttcaacataga |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45641444 |
tccaaacattactaatcaatcattcaatcaatgattcaatatgtggattgcattctttggaacaaaaatcattcttctctaataaactcttcaacataga |
45641345 |
T |
|
| Q |
220 |
atgagtaaatttaggatcattagggtcactaccagttgacccattagggttttccaatacatttggacgcgaaaaacaaaacttgcaaccaaatccattt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45641344 |
atgagtaaatttaggatcattagggtcactactagttgacccattagggttttccaatacatttggacgcgaaaaacaaaacttgcaaccaaatccattt |
45641245 |
T |
|
| Q |
320 |
cgagtagtagtactattatgaccctcaccttgaataatcaccaccttacctatgct |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
45641244 |
cgagtagtagtactattatgaccctcaccttgaataatcaccaccttacctctgct |
45641189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University