View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12528_low_14 (Length: 345)
Name: NF12528_low_14
Description: NF12528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12528_low_14 |
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| [»] scaffold0031 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 51227032 - 51227369
Alignment:
| Q |
1 |
ccaaccaagttgaaaaccccaaaaagggcctaatgcagatgaaacccaaacaacataaccaccattttcaggaaacattgtacccatttcagcagttatt |
100 |
Q |
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| T |
51227032 |
ccaaccaagttgaaaaccccaaaaagggcctaatgcagatgaaacccaaacaacataaccaccattttcaggaaacattgtacccatttcagcagttatt |
51227131 |
T |
|
| Q |
101 |
aatgcttcaggaacactccaaatgagtggaaaaactaagaaaccaacaagagacaacaatggacctgctgctcttactgtgtcttccacaccaaatggtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51227132 |
aatgcttcaggaacactccaaatgagtggaaaaactaagaaaccaacaagagacaacaatggacctgctgctcttactgtgtcttccacaccaaatggtc |
51227231 |
T |
|
| Q |
201 |
cacctgatacctcataaaagattaagaaaattaaaggtatgattgaaacttttttcaacttgtctaattttggaactgaagaaggttgttctggtgtagc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51227232 |
cacctgatacctcataaaagattaagaaaattaaaggtatgattgaaacttttttcaacttgtctaattttggaactgaagaaggttgttctggtgtagc |
51227331 |
T |
|
| Q |
301 |
attttcaccaacgttggttgacatgttttctttctgtg |
338 |
Q |
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| T |
51227332 |
attttcaccaacgttggttgacatgttttctttctgtg |
51227369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 11 - 222
Target Start/End: Complemental strand, 11054765 - 11054554
Alignment:
| Q |
11 |
tgaaaaccccaaaaagggcctaatgcagatgaaacccaaacaacataaccaccattttcaggaaacattgtacccatttcagcagttattaatgcttcag |
110 |
Q |
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| T |
11054765 |
tgaaacccccaaaaaggacctaaagcagacgaaacccaaacaacgtaaccactattttcagggaacatggtacccatttcagcagtaatcaaagcttcag |
11054666 |
T |
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| Q |
111 |
gaacactccaaatgagtggaaaaactaagaaaccaacaagagacaacaatggacctgctgctcttactgtgtcttccacaccaaatggtccacctgatac |
210 |
Q |
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|||||||||| |||| |||||||| || || |||| | || ||||| ||||| |||||| | || || || || |||||||| |||||||| ||||| |
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| T |
11054665 |
gaacactccatatgaaaggaaaaacaaaaaatccaagtaaagctaacaaaggacccgctgctttcacagtatcctcaacaccaaaaggtccacccgatac |
11054566 |
T |
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| Q |
211 |
ctcataaaagat |
222 |
Q |
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|||||| ||||| |
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| T |
11054565 |
ctcatagaagat |
11054554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 146
Target Start/End: Original strand, 42671 - 42808
Alignment:
| Q |
9 |
gttgaaaaccccaaaaagggcctaatgcagatgaaacccaaacaacataaccaccattttcaggaaacattgtacccatttcagcagttattaatgcttc |
108 |
Q |
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|||| ||||||||| |||| ||||| || ||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||| || || ||||| |
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| T |
42671 |
gttggaaaccccaataaggtcctaaagctgatgaaacccaaacaacataaccactgttttcagggaacattgttcccatttcagcagtgatcaaggcttc |
42770 |
T |
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| Q |
109 |
aggaacactccaaatgagtggaaaaactaagaaaccaa |
146 |
Q |
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||| | |||||| || | ||| ||||||| ||| |||| |
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| T |
42771 |
agggatactccatataaatgggaaaactatgaatccaa |
42808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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