View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12528_low_15 (Length: 344)
Name: NF12528_low_15
Description: NF12528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12528_low_15 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 49083478 - 49083137
Alignment:
| Q |
1 |
tgcagctttagatgctattgtagttgatttctctgcaacaaacattaattgtcaataactaacaaaataagggcnnnnnnnttgaacaaaaatacaagat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
49083478 |
tgcagctttagatgctattgtagttgatttctctgcaataaacgttaattgtcaataactaacaaaataagggcaaaaaaattgaacaaaaatacaagat |
49083379 |
T |
|
| Q |
101 |
aaaagaaagttatatacctccagtttcgtccttatactcagccgactccctttcatatttgatagaattatcctgcatattttccatgtatttactatca |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49083378 |
aaaagaaagttatatacctccagttacgtccttatactcagccgactccctttcatatttgatagaattatcctgcatattttccatgtatttactatca |
49083279 |
T |
|
| Q |
201 |
gcttcagaaaatggtgatgtagaagtgaagatactttgcacaaaagagttgccagtttctatgttnnnnnnnggaaattttcctcaagtttgcaggagag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
49083278 |
gcttcagaaaatggtgatgtagaagtgaagatactttgcac--aagagttgccagtttctatgttaaaaaaaggaaattttcctcaagtttgcaggagag |
49083181 |
T |
|
| Q |
301 |
tgagtggctttgtatatgttaccgaagccagacattgaaagtgt |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49083180 |
tgagtggctttgtatatgttaccgaagccagacattgaaagtgt |
49083137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University