View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12528_low_16 (Length: 332)
Name: NF12528_low_16
Description: NF12528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12528_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 107 - 317
Target Start/End: Complemental strand, 44796313 - 44796103
Alignment:
| Q |
107 |
tagtacataacctttacaatatttaggcattgatgttcattgattttgagttgtgattttgtcctagacaccttgtataattgttttgacattaaattaa |
206 |
Q |
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| T |
44796313 |
tagtacataacctttacaatatttaggcattgatgttcattgattttgagttgtgattttgtcgtagacaccttgtataattgttttgacattaaattaa |
44796214 |
T |
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| Q |
207 |
ttgaagaacataatcttattatacaccgtcgacattagatcatttcttttccactttccaacacaactaatttaacttatatatgtagttttctttttta |
306 |
Q |
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| T |
44796213 |
ttgaagaacataatcttattatacaccgtcgatattagatcatttcttttccactttccaacacaactaatttaacttatatatgtagttttctttttta |
44796114 |
T |
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| Q |
307 |
tttgcaaaact |
317 |
Q |
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||||||||||| |
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| T |
44796113 |
tttgcaaaact |
44796103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 119 - 194
Target Start/End: Complemental strand, 44801963 - 44801888
Alignment:
| Q |
119 |
tttacaatatttaggcattgatgttcattgattttgagttgtgattttgtcctagacaccttgtataattgttttg |
194 |
Q |
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| T |
44801963 |
tttacattgtttaggtgttgatgttcattgattttgagttgtgattttgtcatagccaccttgtataattgttttg |
44801888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 44796401 - 44796336
Alignment:
| Q |
15 |
aaaggtccaatcattgatatgataannnnnnngatatggtcatgaattaaaacaaaagtttacata |
80 |
Q |
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| T |
44796401 |
aaaggtccaatcattgatatgataatttttttgatatggtcatgaattaaaacaaaagtttacata |
44796336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 266
Target Start/End: Original strand, 38279474 - 38279538
Alignment:
| Q |
202 |
attaattgaagaacataatcttattatacaccgtcgacattagatcatttcttttccactttcca |
266 |
Q |
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| T |
38279474 |
attaattgaagaacacaattttatcatacaccgccagcattagattatttcttttaccctttcca |
38279538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 266
Target Start/End: Original strand, 29975684 - 29975748
Alignment:
| Q |
202 |
attaattgaagaacataatcttattatacaccgtcgacattagatcatttcttttccactttcca |
266 |
Q |
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| T |
29975684 |
attaattgaagaacacaatcttatcatacactgtcagcattagattatttcttttaccctttcca |
29975748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 266
Target Start/End: Original strand, 10198284 - 10198354
Alignment:
| Q |
196 |
cattaaattaattgaagaacataatcttattatacaccgtcgacattagatcatttcttttccactttcca |
266 |
Q |
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||||| ||||||||||||||| |||||||| |||||| ||| || ||||| |||||| || ||||||||| |
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| T |
10198284 |
cattagattaattgaagaacacaatcttatcatacactgtcagcactagattatttctattacactttcca |
10198354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 266
Target Start/End: Original strand, 38572281 - 38572351
Alignment:
| Q |
196 |
cattaaattaattgaagaacataatcttattatacaccgtcgacattagatcatttcttttccactttcca |
266 |
Q |
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||||| ||||||||||||||| |||||||| |||||| ||| || ||||| |||||| || ||||||||| |
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| T |
38572281 |
cattagattaattgaagaacacaatcttatcatacactgtcagcactagattatttctattacactttcca |
38572351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 266
Target Start/End: Complemental strand, 48620344 - 48620280
Alignment:
| Q |
202 |
attaattgaagaacataatcttattatacaccgtcgacattagatcatttcttttccactttcca |
266 |
Q |
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||||||||||||||| |||||||| |||||| | | |||||||| ||||||||| | ||||||| |
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| T |
48620344 |
attaattgaagaacacaatcttatcatacactgccagcattagattatttcttttaccctttcca |
48620280 |
T |
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